Miyakogusa Predicted Gene

Lj0g3v0282249.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0282249.1 Non Chatacterized Hit- tr|A5BUV6|A5BUV6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,61.29,2,coiled-coil,NULL; Ribonuclease H-like,Ribonuclease H-like
domain; SUBFAMILY NOT NAMED,NULL; UNCHARAC,CUFF.18779.1
         (423 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...   167   2e-41
AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...    73   4e-13

>AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr3:14321838-14323928 FORWARD LENGTH=696
          Length = 696

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 180/377 (47%), Gaps = 38/377 (10%)

Query: 3   CCAHILNLVVSDGLKVQQSSIDYIRNAVRYVRSSSQRTKRFKECIEAELINSKSLVCLDV 62
           C A     +  D L+  +  I  IR++V++V++S    +RF E  E   + S+ ++ LD 
Sbjct: 336 CVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERFTELKEQLQVPSEKVLSLDD 395

Query: 63  ATRWNSTYMMLEHVEKFEKAFDRLHDQETDFRKWFLEDEKGKKKAGPPVETDWQNAMIFI 122
            T+WN+TYMML    + ++ F  L   + D++K             PP   DW++     
Sbjct: 396 QTQWNTTYMMLVAASELKEVFSCLDTADPDYKK-------------PPSAEDWRHVEALC 442

Query: 123 QFLKIFYDVTLSFSSSLHVTSHKCFHEIVSIQSELKSWSRNHFGILGSITSSMSEKFDKY 182
            FLK  ++   +  S+ + ++   FHE+   QS+L          +  I  +M EK DKY
Sbjct: 443 TFLKPLFEAVSTLQSTGNPSAVTFFHEVWKTQSDLSRAIAGEDPFVTGIAKTMQEKVDKY 502

Query: 183 WGNIEKFNPLLLVAVVLDPRYKLEYVTYCIEDMYDVDLAASMSTFVMDTLNDLYKFYSKE 242
           W +      +L +AVV+DPR+K++ V +    ++  D   ++ T V D +++L+  Y   
Sbjct: 503 WRDCSL---VLAMAVVMDPRFKMKLVEFSFSKIFGEDAGKNIKT-VDDGIHELFTEYMAL 558

Query: 243 IADHKDNEDGDSSNSVVADDRLKRVDGLQSVTQNRVQVWXXXXXXXXXXXXXXLERYLXX 302
            +      +G  ++ +   D       +++  QN                   L++YL  
Sbjct: 559 PSPQNTTSEGGKADGLSDFDTYI----METTGQN---------------LKSELDQYL-- 597

Query: 303 XXXXXXXXXXFNILDWWKSNSSKYRILSIIARDVLAIPVSTVASESCFGTSRRVLDVFRS 362
                     F++LDWWK N  KY  LS +ARD+L+IPVS  A +  F    R +D +++
Sbjct: 598 DETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKT 657

Query: 363 SLSPKMTEALICAQNWL 379
           SL P+  EALICA+ WL
Sbjct: 658 SLRPETVEALICAREWL 674


>AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr1:6385614-6388005 FORWARD LENGTH=690
          Length = 690

 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 160/394 (40%), Gaps = 33/394 (8%)

Query: 1   MRCCAHILNLVVSDGLKVQQSSIDYIRNAVRYVRSSSQRTKRFKECIEAELINSKSLVCL 60
           + C A  LN ++ +GL   +  I  +R   + + +S++ +  F +   A    +  L  +
Sbjct: 303 IPCAAQTLNDIIDEGLATIKPIISKVREFTQELNASTELSDDFIQLTTAYQEGNWKLP-I 361

Query: 61  DVATRWNSTYMMLEHVEKFEKAFDRLHDQETDFRKWFLEDEKGKKKAGPPVETDWQNAMI 120
           D ++RW+  Y M+  + K  K+ D +  +  D     LE+            T   N + 
Sbjct: 362 DASSRWSGNYQMVNILCKASKSLDSVIRKNEDA----LENRMMLSSVEKNAVTIVHNYLD 417

Query: 121 FIQFLKIFYDVTLSFSSSLHVTSHKCFHEIVSIQSELKSWSRNHFGILGSITSSMSEKFD 180
              F K   D  +  +  L V     F + +S        S ++   L +   SM++K  
Sbjct: 418 LDSFHKTTND--MCTNKDLTVGLALLFMDNISEMITTCQKSCHNPDWLRTCAESMAQKAR 475

Query: 181 KYWGNIEKFNPLLLVAVVLDPRYKLEYVTYCIEDMYDVDLAASMSTFVMDTLNDLYKFYS 240
            Y  N +  N    +  +LDPR K EY+   I     +D A S   F+ +  +    F S
Sbjct: 476 SY--NTQVCNVFTYITAILDPRIKTEYIPETINLESYIDEARSH--FIRNYSSS--HFTS 529

Query: 241 KEIADHKDNEDGDSSNSVVADDRLKRVDGLQSVTQNRVQVWXXXXXXXXXXXXXXLERYL 300
              + ++  E  +   ++   + + R     S++ N V                 L +YL
Sbjct: 530 SMTSGYRPQEVDEGGGNISFAEEIARRKRRGSMSNNVVD---------------ELTQYL 574

Query: 301 XXXXXXXXXXXXFNILDWWKSNSSKYRILSIIARDVLAIPVSTVASESCFGTSRRVLDVF 360
                        ++LDWWK NS +Y  LS +ARD LA+  ++ A E  F      +D  
Sbjct: 575 SESIVPMQT----DVLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQ 630

Query: 361 RSSLSPKMTEALICAQNWLNPAGCKFDEEIDQFD 394
           +  +    T+++IC ++W+  AG K   +  + D
Sbjct: 631 KYCMPHDSTQSVICIRSWIE-AGMKLKYKCSEID 663