Miyakogusa Predicted Gene

Lj0g3v0282189.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0282189.1 Non Chatacterized Hit- tr|I1NER6|I1NER6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.7248
PE=,82.73,0,HLH,Helix-loop-helix domain; NAI1, DNA BINDING /
TRANSCRIPTION FACTOR,NULL; CIRCADIAN PROTEIN CLOCK/,CUFF.18773.1
         (216 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14410.2 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) D...   208   2e-54
AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) D...   208   3e-54
AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH) DN...   167   6e-42
AT1G51070.1 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) D...   156   1e-38
AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix (b...   154   5e-38
AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) D...   152   1e-37
AT3G19860.1 | Symbols: bHLH121 | basic helix-loop-helix (bHLH) D...    77   1e-14
AT3G19860.2 | Symbols: bHLH121 | basic helix-loop-helix (bHLH) D...    76   2e-14
AT4G36060.2 | Symbols: bHLH11 | basic helix-loop-helix (bHLH) DN...    63   2e-10
AT4G36060.1 | Symbols: bHLH11 | basic helix-loop-helix (bHLH) DN...    62   2e-10
AT4G17880.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-bind...    51   7e-07
AT3G47640.3 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-b...    48   4e-06
AT3G47640.2 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-b...    48   4e-06
AT3G47640.1 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-b...    48   4e-06

>AT4G14410.2 | Symbols: bHLH104 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:8300418-8301503
           FORWARD LENGTH=277
          Length = 277

 Score =  208 bits (529), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/167 (63%), Positives = 124/167 (74%), Gaps = 3/167 (1%)

Query: 51  TRKRGRTDSCCKAG-TKACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVL 109
           +RKR RT SC + G TKACRE+ RREKLNERF +LSSVLEPGR  KTDKPAILDDAIR+L
Sbjct: 113 SRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRIL 172

Query: 110 SQLKTEAQXXXXXXXXXXXXXXCLKAEKNELREEKLVLKADKERIEKKLKALPVSAGGFL 169
           +QL+ EA                LKAEKNELREEKLVLKADKE+ E++LK++   + GF+
Sbjct: 173 NQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFI 232

Query: 170 PPPMAAYQPTVNKMAVYPNYGYIPMWQYLPSSARDTSHDHELRPPAA 216
           P   AA+    NKMAVYP+YGY+PMW Y+P S RDTS D ELRPPAA
Sbjct: 233 PHIPAAFNH--NKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPPAA 277


>AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:8300077-8301503
           FORWARD LENGTH=283
          Length = 283

 Score =  208 bits (529), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/167 (63%), Positives = 124/167 (74%), Gaps = 3/167 (1%)

Query: 51  TRKRGRTDSCCKAG-TKACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVL 109
           +RKR RT SC + G TKACRE+ RREKLNERF +LSSVLEPGR  KTDKPAILDDAIR+L
Sbjct: 119 SRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRIL 178

Query: 110 SQLKTEAQXXXXXXXXXXXXXXCLKAEKNELREEKLVLKADKERIEKKLKALPVSAGGFL 169
           +QL+ EA                LKAEKNELREEKLVLKADKE+ E++LK++   + GF+
Sbjct: 179 NQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFI 238

Query: 170 PPPMAAYQPTVNKMAVYPNYGYIPMWQYLPSSARDTSHDHELRPPAA 216
           P   AA+    NKMAVYP+YGY+PMW Y+P S RDTS D ELRPPAA
Sbjct: 239 PHIPAAFNH--NKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPPAA 283


>AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:8283255-8284915
           REVERSE LENGTH=320
          Length = 320

 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 96/174 (55%), Positives = 119/174 (68%), Gaps = 7/174 (4%)

Query: 48  QENTRKRGRTDSCCKAGTKACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIR 107
           +E + KR RT SC K GTKACREK RREKLN++F +LSSVLEPGR  KTDK AILDDAIR
Sbjct: 149 EECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIR 208

Query: 108 VLSQLKTEAQXXXXXXXXXXXXXXCLKAEKNELREEKLVLKADKERIEKKLKALPVSAGG 167
           V++QL+ EA                LKA+KNELREEKLVLKA+KE++E++LK++ V + G
Sbjct: 209 VVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPG 268

Query: 168 FLPPPM-AAYQPTVNKMAVYPNYGY----IPMWQYLPSSARDTSHDHELRPPAA 216
           F+P    AA+    +KMAV   YGY    +PMW  LP + RDTS D +  PP A
Sbjct: 269 FMPSQHPAAFHS--HKMAVAYPYGYYPPNMPMWSPLPPADRDTSRDLKNLPPVA 320


>AT1G51070.1 | Symbols: bHLH115 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:18928018-18929513
           FORWARD LENGTH=226
          Length = 226

 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 131/213 (61%), Gaps = 9/213 (4%)

Query: 12  FLDYSFLDPPPTDFLWS-NPNQSVIAEAD--FPSVAVASQENTRKRGRTDSCCKAGTKAC 68
            ++ +F D  PT F W  + + +V  E D       V  + ++RKR +T+SC  + +KAC
Sbjct: 15  LIEGAFSDQNPT-FPWQIDGSATVSVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKAC 73

Query: 69  REKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVLSQLKTEAQXXXXXXXXXXX 128
           REKQRR++LN++F ELSSVLEPGR  KTDK AI++DAIR+++Q + EAQ           
Sbjct: 74  REKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQE 133

Query: 129 XXXCLKAEKNELREEKLVLKADKERIEKKLKAL---PVSAGGFLPPP--MAAYQPTVNKM 183
               LK EKNELR+EK  LK +KERI+++LKA+   P     FLP P  ++  Q   +K+
Sbjct: 134 KIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQAPGSKL 193

Query: 184 AVYPNYGYIPMWQYLPSSARDTSHDHELRPPAA 216
             +  Y    MWQ++P +A DTS DH LRPP A
Sbjct: 194 VPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 226


>AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr5:22217270-22218993 FORWARD LENGTH=234
          Length = 234

 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/223 (42%), Positives = 127/223 (56%), Gaps = 22/223 (9%)

Query: 11  DFLDYSFLDPPPTDFLWSNPNQSVIAEADFPSVAV--------ASQE-NTRKRGRTDSCC 61
           D+  ++   P    F W  P Q  I  +   S  V        AS+E  ++KRGR +S  
Sbjct: 17  DYGSFTIQGP---GFSW--PVQQPIGVSSNSSAGVDGSAGNSEASKEPGSKKRGRCESSS 71

Query: 62  KAGTKACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVLSQLKTEAQXXXX 121
              +KACREKQRR++LN++F EL ++LEPG P KTDK AIL DA+R+++QL+ EAQ    
Sbjct: 72  ATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKD 131

Query: 122 XXXXXXXXXXCLKAEKNELREEKLVLKADKERIEKKLKALPVSAGGFLP-PPM------- 173
                      LK EKNELR+EK  LK +KE++E++LKA+      F P PPM       
Sbjct: 132 SNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPPMMPTAFAS 191

Query: 174 AAYQPTVNKMAVYPNYGYIPMWQYLPSSARDTSHDHELRPPAA 216
           A  Q   NKM    +Y  + MWQ++P ++ DTS DH LRPP A
Sbjct: 192 AQGQAPGNKMVPIISYPGVAMWQFMPPASVDTSQDHVLRPPVA 234


>AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:18928018-18929513
           FORWARD LENGTH=292
          Length = 292

 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 116/177 (65%), Gaps = 5/177 (2%)

Query: 45  VASQENTRKRGRTDSCCKAGTKACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDD 104
           V  + ++RKR +T+SC  + +KACREKQRR++LN++F ELSSVLEPGR  KTDK AI++D
Sbjct: 116 VIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIIND 175

Query: 105 AIRVLSQLKTEAQXXXXXXXXXXXXXXCLKAEKNELREEKLVLKADKERIEKKLKAL--- 161
           AIR+++Q + EAQ               LK EKNELR+EK  LK +KERI+++LKA+   
Sbjct: 176 AIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQ 235

Query: 162 PVSAGGFLPPP--MAAYQPTVNKMAVYPNYGYIPMWQYLPSSARDTSHDHELRPPAA 216
           P     FLP P  ++  Q   +K+  +  Y    MWQ++P +A DTS DH LRPP A
Sbjct: 236 PQPQPCFLPNPQTLSQAQAPGSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 292


>AT3G19860.1 | Symbols: bHLH121 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:6904579-6905863
           FORWARD LENGTH=284
          Length = 284

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 74/148 (50%), Gaps = 6/148 (4%)

Query: 58  DSCCKAGTKACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVLSQLKTEAQ 117
           D   +   KA REK RREKLNE F EL +VL+P RP K DK  IL D +++L +L +E  
Sbjct: 2   DVSARKSQKAGREKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVN 60

Query: 118 XXXXXXXXXXXXXXCLKAEKNELREEKLVLKADKERI----EKKLKAL-PVSAGGFLPPP 172
                          L  EKN+LREEK  LK+D E +    +++L+++ P  A       
Sbjct: 61  KLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPWGAAMDHTVM 120

Query: 173 MAAYQPTVNKMAVYPNYGYIPMWQYLPS 200
           MA        M +    G IPM   +PS
Sbjct: 121 MAPPPSFPYPMPIAMPPGSIPMHPSMPS 148


>AT3G19860.2 | Symbols: bHLH121 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:6903842-6905863
           FORWARD LENGTH=337
          Length = 337

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 74/148 (50%), Gaps = 6/148 (4%)

Query: 58  DSCCKAGTKACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVLSQLKTEAQ 117
           D   +   KA REK RREKLNE F EL +VL+P RP K DK  IL D +++L +L +E  
Sbjct: 55  DVSARKSQKAGREKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVN 113

Query: 118 XXXXXXXXXXXXXXCLKAEKNELREEKLVLKADKERI----EKKLKAL-PVSAGGFLPPP 172
                          L  EKN+LREEK  LK+D E +    +++L+++ P  A       
Sbjct: 114 KLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPWGAAMDHTVM 173

Query: 173 MAAYQPTVNKMAVYPNYGYIPMWQYLPS 200
           MA        M +    G IPM   +PS
Sbjct: 174 MAPPPSFPYPMPIAMPPGSIPMHPSMPS 201


>AT4G36060.2 | Symbols: bHLH11 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17055521-17056567
           FORWARD LENGTH=268
          Length = 268

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 66  KACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVLSQLKTEAQXXXXXXXX 125
           KA REK RR+KL E+F EL + L+P RP K+DK ++L D I++L  +  +          
Sbjct: 31  KAEREKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEYET 89

Query: 126 XXXXXXCLKAEKNELREEKLVLKADKE 152
                  L  EK+ELREEK  LK+D E
Sbjct: 90  LSQESRELIQEKSELREEKATLKSDIE 116


>AT4G36060.1 | Symbols: bHLH11 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17055397-17056567
           FORWARD LENGTH=286
          Length = 286

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 66  KACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVLSQLKTEAQXXXXXXXX 125
           KA REK RR+KL E+F EL + L+P RP K+DK ++L D I++L  +  +          
Sbjct: 49  KAEREKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEYET 107

Query: 126 XXXXXXCLKAEKNELREEKLVLKADKE 152
                  L  EK+ELREEK  LK+D E
Sbjct: 108 LSQESRELIQEKSELREEKATLKSDIE 134


>AT4G17880.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-binding
           family protein | chr4:9933702-9935471 REVERSE LENGTH=589
          Length = 589

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 16  SFLDPPPTDFLWSNPNQSVIAEADFPSVAVASQENTRKRGRTDSCCKAG--TKACREKQR 73
           SF    P D   S+   SV  EA+   V V  ++  RKRGR  +  +         E+QR
Sbjct: 365 SFTSVLPCDSNHSDLEASVAKEAESNRVVVEPEKKPRKRGRKPANGREEPLNHVEAERQR 424

Query: 74  REKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVLSQLKTEAQ 117
           REKLN+RF  L +V+      K DK ++L DAI  +S+LK++ Q
Sbjct: 425 REKLNQRFYSLRAVVP--NVSKMDKASLLGDAISYISELKSKLQ 466


>AT3G47640.3 | Symbols: PYE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:17568035-17569101
           FORWARD LENGTH=240
          Length = 240

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 58  DSCCKAG------TKACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVLSQ 111
           D  C+ G       KA RE+ +RE LNE F EL+  LE  +   + K +IL +A R L  
Sbjct: 18  DERCRKGKVPKRINKAVRERLKREHLNELFIELADTLELNQQ-NSGKASILCEATRFLKD 76

Query: 112 LKTEAQXXXXXXXXXXXXXXCLKAEKNELREEKLVLKADKERIEKKLKA 160
           +  + +               +  EKNEL+EE  VL+ +  +++ +++A
Sbjct: 77  VFGQIESLRKEHASLLSESSYVTTEKNELKEETSVLETEISKLQNEIEA 125


>AT3G47640.2 | Symbols: PYE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:17568035-17569101
           FORWARD LENGTH=240
          Length = 240

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 58  DSCCKAG------TKACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVLSQ 111
           D  C+ G       KA RE+ +RE LNE F EL+  LE  +   + K +IL +A R L  
Sbjct: 18  DERCRKGKVPKRINKAVRERLKREHLNELFIELADTLELNQQ-NSGKASILCEATRFLKD 76

Query: 112 LKTEAQXXXXXXXXXXXXXXCLKAEKNELREEKLVLKADKERIEKKLKA 160
           +  + +               +  EKNEL+EE  VL+ +  +++ +++A
Sbjct: 77  VFGQIESLRKEHASLLSESSYVTTEKNELKEETSVLETEISKLQNEIEA 125


>AT3G47640.1 | Symbols: PYE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:17568035-17569101
           FORWARD LENGTH=240
          Length = 240

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 58  DSCCKAG------TKACREKQRREKLNERFCELSSVLEPGRPVKTDKPAILDDAIRVLSQ 111
           D  C+ G       KA RE+ +RE LNE F EL+  LE  +   + K +IL +A R L  
Sbjct: 18  DERCRKGKVPKRINKAVRERLKREHLNELFIELADTLELNQQ-NSGKASILCEATRFLKD 76

Query: 112 LKTEAQXXXXXXXXXXXXXXCLKAEKNELREEKLVLKADKERIEKKLKA 160
           +  + +               +  EKNEL+EE  VL+ +  +++ +++A
Sbjct: 77  VFGQIESLRKEHASLLSESSYVTTEKNELKEETSVLETEISKLQNEIEA 125