Miyakogusa Predicted Gene

Lj0g3v0281979.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0281979.1 CUFF.18753.1
         (89 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55370.2 | Symbols: OBP3 | OBF-binding protein 3 | chr3:20527...    61   2e-10
AT3G55370.1 | Symbols: OBP3 | OBF-binding protein 3 | chr3:20527...    60   3e-10
AT5G02460.1 | Symbols:  | Dof-type zinc finger DNA-binding famil...    58   1e-09
AT3G55370.3 | Symbols: OBP3 | OBF-binding protein 3 | chr3:20527...    52   7e-08
AT2G37590.1 | Symbols: ATDOF2.4, DOF2.4 | DNA binding with one f...    51   2e-07
AT2G28810.2 | Symbols:  | Dof-type zinc finger DNA-binding famil...    46   6e-06
AT2G28810.1 | Symbols:  | Dof-type zinc finger DNA-binding famil...    46   6e-06

>AT3G55370.2 | Symbols: OBP3 | OBF-binding protein 3 |
          chr3:20527198-20528876 FORWARD LENGTH=354
          Length = 354

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 39/89 (43%)

Query: 1  MVFTSIPVAYLDAANWXXXXXXXXXXXXXSTSQQRLXXXXXXXXXXHGAGGTGSIRWEWI 60
          MVF+S+PV   D+ NW             +                    G+   R   +
Sbjct: 1  MVFSSLPVNQFDSQNWQQQGNQHQLECVTTDQNPNNYLRQLSSPPTSQVAGSSQARVNSM 60

Query: 61 AERARMANRPKPETALKCPRCHSTNTKFC 89
           ERAR+A  P PE AL CPRC STNTKFC
Sbjct: 61 VERARIAKVPLPEAALNCPRCDSTNTKFC 89


>AT3G55370.1 | Symbols: OBP3 | OBF-binding protein 3 |
          chr3:20527198-20528876 FORWARD LENGTH=323
          Length = 323

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 39/89 (43%)

Query: 1  MVFTSIPVAYLDAANWXXXXXXXXXXXXXSTSQQRLXXXXXXXXXXHGAGGTGSIRWEWI 60
          MVF+S+PV   D+ NW             +                    G+   R   +
Sbjct: 1  MVFSSLPVNQFDSQNWQQQGNQHQLECVTTDQNPNNYLRQLSSPPTSQVAGSSQARVNSM 60

Query: 61 AERARMANRPKPETALKCPRCHSTNTKFC 89
           ERAR+A  P PE AL CPRC STNTKFC
Sbjct: 61 VERARIAKVPLPEAALNCPRCDSTNTKFC 89


>AT5G02460.1 | Symbols:  | Dof-type zinc finger DNA-binding family
           protein | chr5:539549-541058 REVERSE LENGTH=399
          Length = 399

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/35 (77%), Positives = 29/35 (82%)

Query: 55  IRWEWIAERARMANRPKPETALKCPRCHSTNTKFC 89
           IR   +AERAR+AN P PETALKCPRC STNTKFC
Sbjct: 74  IRPGSMAERARLANIPLPETALKCPRCDSTNTKFC 108


>AT3G55370.3 | Symbols: OBP3 | OBF-binding protein 3 |
           chr3:20527198-20528876 FORWARD LENGTH=368
          Length = 368

 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/40 (57%), Positives = 26/40 (65%)

Query: 50  GGTGSIRWEWIAERARMANRPKPETALKCPRCHSTNTKFC 89
            G+   R   + ERAR+A  P PE AL CPRC STNTKFC
Sbjct: 95  AGSSQARVNSMVERARIAKVPLPEAALNCPRCDSTNTKFC 134


>AT2G37590.1 | Symbols: ATDOF2.4, DOF2.4 | DNA binding with one
           finger 2.4 | chr2:15769292-15770497 FORWARD LENGTH=330
          Length = 330

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 25/35 (71%)

Query: 55  IRWEWIAERARMANRPKPETALKCPRCHSTNTKFC 89
           IR   + +RAR AN   PE ALKCPRC STNTKFC
Sbjct: 68  IRAGSMVDRARQANVALPEAALKCPRCESTNTKFC 102


>AT2G28810.2 | Symbols:  | Dof-type zinc finger DNA-binding family
          protein | chr2:12363934-12365080 FORWARD LENGTH=323
          Length = 323

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/30 (73%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 61 AERARMA-NRPKPETALKCPRCHSTNTKFC 89
          AERAR+A N   PE ALKCPRC S NTKFC
Sbjct: 61 AERARLAKNSQPPEGALKCPRCDSANTKFC 90


>AT2G28810.1 | Symbols:  | Dof-type zinc finger DNA-binding family
           protein | chr2:12363681-12365080 FORWARD LENGTH=340
          Length = 340

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/30 (73%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 61  AERARMA-NRPKPETALKCPRCHSTNTKFC 89
           AERAR+A N   PE ALKCPRC S NTKFC
Sbjct: 78  AERARLAKNSQPPEGALKCPRCDSANTKFC 107