Miyakogusa Predicted Gene

Lj0g3v0281489.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0281489.1 Non Chatacterized Hit- tr|I1MN40|I1MN40_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57465
PE,83.99,0,VWA_2,NULL; UIM,Ubiquitin interacting motif; 26S PROTEASOME
NON-ATPASE REGULATORY SUBUNIT 4,NULL; vo,CUFF.18717.1
         (405 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38630.1 | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory pa...   410   e-115

>AT4G38630.1 | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory
           particle non-ATPase 10 | chr4:18057357-18059459 REVERSE
           LENGTH=386
          Length = 386

 Score =  410 bits (1054), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/391 (56%), Positives = 268/391 (68%), Gaps = 24/391 (6%)

Query: 1   MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVR 60
           MVLEATMICIDNSEWMRNGDYSPSR QAQ +AVNL+CGAKTQSNPENTVG+LTMAGKGVR
Sbjct: 1   MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60

Query: 61  VLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFTGSPIKH 120
           VL TPTSDLGKILACMHGL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+
Sbjct: 61  VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120

Query: 121 EKKMLEMIGRKLKKNSVALDIVNFGEED-EGKTEKLDALLAAVNNNDTSRMAHVPPGPNA 179
           EKK LE++G++LKKNSV+LDIVNFGE+D E K +KL+ALL AVNNND S + HVP G NA
Sbjct: 121 EKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANA 180

Query: 180 LSDVLISTPIFTXXXXXXXXXXXXXXXXXXXXXVSGYDFGVDPNLDPELALALRVSMXXX 239
           LSDVL+STP+FT                        +DFGVDPN+DPELALALRVSM   
Sbjct: 181 LSDVLLSTPVFTGDEGASGYVSAAAAAAAAG---GDFDFGVDPNIDPELALALRVSMEEE 237

Query: 240 XXXXXXXXXXXXXXXXXXNG-GEQQASSQDAAMIERXXXXXXXXXXKTNDMMDDENALLQ 298
                             +  G+  ++SQ+                K  + MD+++ALL 
Sbjct: 238 RARQEAAAKKAADEAGQKDKDGDTASASQETV---------ARTTDKNAEPMDEDSALLD 288

Query: 299 QALAMSMDDPVINKDMRDTDMSXXXXXXXXXXXXXXXSVADGSEDSGSQSDMSKLLADQS 358
           QA+AMS+ D          +MS               S++ G E S +    + LL +Q+
Sbjct: 289 QAIAMSVGD---------VNMSEAADEDQDLALALQMSMS-GEESSEATGAGNNLLGNQA 338

Query: 359 FVSSILASLPGVDPNDPSVKDLLASMQNQSE 389
           F+SS+L+SLPGVDPNDP+VK+LLAS+ ++S+
Sbjct: 339 FISSVLSSLPGVDPNDPAVKELLASLPDESK 369