Miyakogusa Predicted Gene

Lj0g3v0280999.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0280999.1 tr|B4DPS2|B4DPS2_HUMAN cDNA FLJ55128 OS=Homo
sapiens PE=2 SV=1,28.4,8e-19,UNCHARACTERIZED,Uncharacterised protein
family UPF0406; seg,NULL; HVSL,Uncharacterised protein
famil,CUFF.18684.1
         (282 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51170.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   306   8e-84
AT5G51170.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   192   2e-49

>AT5G51170.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Uncharacterised protein family UPF0406
           (InterPro:IPR019146); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:20793906-20795330 REVERSE LENGTH=285
          Length = 285

 Score =  306 bits (785), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 147/222 (66%), Positives = 176/222 (79%), Gaps = 1/222 (0%)

Query: 60  IRVRSFPHADGNYALHVYIPVNISSQSKKEIAGILKKVSSREPTLYVVDVDVPLNTLCKN 119
           +RVR+FPH DGNYALHVY+PV I    KKEI   LKKV+S  P L++V+ DVPL+ LCK+
Sbjct: 64  VRVRNFPHVDGNYALHVYVPVCIPPLPKKEIVCFLKKVASVVPHLHLVEADVPLSILCKD 123

Query: 120 DEKLEQVALGREFHISLGRTVPIRVHQIDSMVSMLRQKLQSHHNFWIDFNKWEVFVNDDH 179
           D+K E+ ALGREFHISLGR VP+RVHQI+S++SMLRQKLQ    + IDFNKWEVFVNDDH
Sbjct: 124 DQKFER-ALGREFHISLGRNVPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVNDDH 182

Query: 180 TRTFISLEVVQGGLVEIKKQIEAVNAIYKLHNLPEFYKDPRPHISLAWALGDITHSLKKV 239
           TR+F+SLE+   GL EI KQI+AVN +YKLHNLPEFYKDPRPHISL WALGDI  SLK  
Sbjct: 183 TRSFLSLEITTSGLSEISKQIDAVNEVYKLHNLPEFYKDPRPHISLVWALGDIRTSLKGA 242

Query: 240 VDEEIKQCVVGKSLKKCIFNCKFKGIECKIGKKSYKICKISD 281
           VD E+++   G  ++  IF  KF GIECKIG K++KICK+ D
Sbjct: 243 VDVELRKLRAGGCVQNRIFTSKFCGIECKIGNKTHKICKLPD 284


>AT5G51170.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: Uncharacterised protein family
           UPF0406 (InterPro:IPR019146); Has 166 Blast hits to 166
           proteins in 77 species: Archae - 0; Bacteria - 0;
           Metazoa - 100; Fungi - 19; Plants - 35; Viruses - 0;
           Other Eukaryotes - 12 (source: NCBI BLink). |
           chr5:20794046-20795330 REVERSE LENGTH=238
          Length = 238

 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/141 (64%), Positives = 113/141 (80%), Gaps = 1/141 (0%)

Query: 60  IRVRSFPHADGNYALHVYIPVNISSQSKKEIAGILKKVSSREPTLYVVDVDVPLNTLCKN 119
           +RVR+FPH DGNYALHVY+PV I    KKEI   LKKV+S  P L++V+ DVPL+ LCK+
Sbjct: 64  VRVRNFPHVDGNYALHVYVPVCIPPLPKKEIVCFLKKVASVVPHLHLVEADVPLSILCKD 123

Query: 120 DEKLEQVALGREFHISLGRTVPIRVHQIDSMVSMLRQKLQSHHNFWIDFNKWEVFVNDDH 179
           D+K E+ ALGREFHISLGR VP+RVHQI+S++SMLRQKLQ    + IDFNKWEVFVNDDH
Sbjct: 124 DQKFER-ALGREFHISLGRNVPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVNDDH 182

Query: 180 TRTFISLEVVQGGLVEIKKQI 200
           TR+F+SLE+   GL E+  ++
Sbjct: 183 TRSFLSLEITTSGLSEVLSKL 203