Miyakogusa Predicted Gene

Lj0g3v0280889.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0280889.2 Non Chatacterized Hit- tr|F6HV53|F6HV53_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,40,4e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.18685.2
         (224 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G59650.1 | Symbols: CW14 | Protein of unknown function (DUF13...   124   4e-29
AT1G10410.1 | Symbols:  | Protein of unknown function (DUF1336) ...    81   5e-16

>AT1G59650.1 | Symbols: CW14 | Protein of unknown function (DUF1336)
           | chr1:21920099-21922670 FORWARD LENGTH=492
          Length = 492

 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 118/216 (54%), Gaps = 44/216 (20%)

Query: 1   MGACVSTPQGCVXXXXXXXXXXXXXXXXXXXXXVCCRLYKKGKGSSLDKVDVPGDRSFAN 60
           MG CVSTP+ CV                           +K +  S  ++    D SF N
Sbjct: 1   MGGCVSTPKSCVGGKIRSSKRRKTRTRRKI---------QKKRVVSSSRL---SDGSFDN 48

Query: 61  NPTFQAGSIIEEAWFDSVAVFESDCDDDYQSVPDDVVSLNGIE--SISSFASSRDGNQVS 118
           NPTF+A   ++EAWFDS   FE+DCDDD+ SV +D +S+NG E  S+SS +S +D N   
Sbjct: 49  NPTFRAS--VDEAWFDSNLAFETDCDDDFHSVQEDTLSVNGCERISVSSMSSVKDSN--- 103

Query: 119 TDQVQKTKELLSRGYSGNISEAARISDVQHSSVDVIDSQCKCDRNIVEGNEPVFLDEISS 178
                             +  +AR     +S  DVI SQ K +  +++  + VF+DEISS
Sbjct: 104 ------------------LGGSAR-----NSLSDVI-SQSKSESALIDTKQAVFIDEISS 139

Query: 179 -VDANSIKEDGILDNCGILPNNCLPCLASTVPSIEK 213
             D +S K++G+L+NCGILP+NCLPCL STVPSIEK
Sbjct: 140 NADGSSNKDEGLLENCGILPSNCLPCLNSTVPSIEK 175


>AT1G10410.1 | Symbols:  | Protein of unknown function (DUF1336) |
           chr1:3416842-3419264 REVERSE LENGTH=485
          Length = 485

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 97/214 (45%), Gaps = 44/214 (20%)

Query: 1   MGACVSTPQGCVXXXXXXXXXXXXXXXXXXXXXVCCRLYKKGKGSSLDKVDVPGDRSFAN 60
           MG CVSTP+ CV                           +   GS  D +D    R+F+N
Sbjct: 1   MGGCVSTPKSCVGAKLRSSKRRKSRRRRKIQRKRAAVSSRLSDGS-FDNLD-HHHRNFSN 58

Query: 61  NPTFQAGSIIEEAWFDSVAVFESDCDDDYQSVPDDVVSLNGIESISSFASSRDGNQVSTD 120
             +   G   E+AWF+S   FE+DCDDD+ SV +D +SLNG E +S              
Sbjct: 59  PSSRATG---EDAWFESNVAFETDCDDDFHSVHEDALSLNGSERVSL------------- 102

Query: 121 QVQKTKELLSRGYSGNISEAARISDVQHSSVDVIDSQCKCDRNIVEGNEPVFLDEISSVD 180
                            S     S  + +  + + SQ K D ++ + N+P  +D  SS D
Sbjct: 103 -----------------SSTTTTSSTRDTDSNEVMSQSKSDGDLNDTNQPDLID--SSAD 143

Query: 181 ANSIKEDGILDNCGILPNNCLPCL-ASTVPSIEK 213
                 +G+L+NC ILP+NCLPCL  +TVPSI+K
Sbjct: 144 ------EGLLENCRILPSNCLPCLNTTTVPSIDK 171