Miyakogusa Predicted Gene

Lj0g3v0280759.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0280759.1 Non Chatacterized Hit- tr|D8QYZ8|D8QYZ8_SELML
Putative uncharacterized protein OS=Selaginella
moelle,61.33,1e-18,Cmc1,Cytochrome c oxidase biogenesis protein
Cmc1-like,CUFF.18668.1
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16060.1 | Symbols:  | Cytochrome c oxidase biogenesis protei...   141   2e-34

>AT5G16060.1 | Symbols:  | Cytochrome c oxidase biogenesis protein
           Cmc1-like | chr5:5246161-5247209 FORWARD LENGTH=95
          Length = 95

 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 78/90 (86%)

Query: 90  GYIQDARENHVKKKEEEALRSKMKQKALKQCDRYTAKYAECASGRTLSVVWQCRQQAKEL 149
            Y++ ARENHVKKK EEALRSKMK KAL +CD+Y +KYA+CA+GRT SVVW CR+QA+EL
Sbjct: 3   SYVEQARENHVKKKVEEALRSKMKAKALMECDQYVSKYAQCATGRTFSVVWTCRKQAREL 62

Query: 150 NECLHHFTNDSVLEEMKKAYMLKQGGEGSA 179
           N CLH FTND+VLEEMK+AYM+++ G+ SA
Sbjct: 63  NTCLHQFTNDNVLEEMKRAYMVQEEGKVSA 92