Miyakogusa Predicted Gene

Lj0g3v0280159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0280159.1 tr|Q84ZV5|Q84ZV5_SOYBN Polyprotein OS=Glycine max
PE=4 SV=1,71.14,0,RT_POL,Reverse transcriptase; RETROVIRUS
POLYPROTEIN,NULL; GAG/POL/ENV POLYPROTEIN,NULL; DNA/RNA
pol,CUFF.18644.1
         (447 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00860.1 | Symbols: ORF158 | DNA/RNA polymerases superfamily ...   132   4e-31

>ATMG00860.1 | Symbols: ORF158 | DNA/RNA polymerases superfamily
           protein | chrM:235916-236392 FORWARD LENGTH=158
          Length = 158

 Score =  132 bits (333), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 88/126 (69%), Gaps = 2/126 (1%)

Query: 324 HLESVLQTLQHHVLFARLSKCSFGLLEVEYLGH--MVSGTGVAMETSKIQAILEWPQPVS 381
           HL  VLQ  + H  +A   KC+FG  ++ YLGH  ++SG GV+ + +K++A++ WP+P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 382 IKQLRGFLGLTGYYRQFIQSYAMIAGPLTDLLKKDSFCWTEAAHQAFIKLKHVITSAPVL 441
             +LRGFLGLTGYYR+F+++Y  I  PLT+LLKK+S  WTE A  AF  LK  +T+ PVL
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

Query: 442 ALPNFS 447
           ALP+  
Sbjct: 123 ALPDLK 128