Miyakogusa Predicted Gene

Lj0g3v0279729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0279729.1 NODE_38046_length_109_cov_221.605499.path2.1
         (50 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46180.1 | Symbols: DELTA-OAT | ornithine-delta-aminotransfer...    94   1e-20
AT3G22200.2 | Symbols: POP2 | Pyridoxal phosphate (PLP)-dependen...    52   8e-08
AT3G22200.1 | Symbols: POP2, GABA-T, HER1 | Pyridoxal phosphate ...    52   9e-08

>AT5G46180.1 | Symbols: DELTA-OAT | ornithine-delta-aminotransferase
           | chr5:18718766-18721271 REVERSE LENGTH=475
          Length = 475

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/50 (82%), Positives = 48/50 (96%)

Query: 1   MIADEIQSGLGRAGKMLACDWEDVRPDVVILAKALGGGILPVSAVLADKD 50
           MIADE+QSGL R+GKMLACDWE++RPD+VIL KALGGG++PVSAVLADKD
Sbjct: 262 MIADEVQSGLARSGKMLACDWEEIRPDMVILGKALGGGVIPVSAVLADKD 311


>AT3G22200.2 | Symbols: POP2 | Pyridoxal phosphate (PLP)-dependent
           transferases superfamily protein | chr3:7835457-7838863
           FORWARD LENGTH=513
          Length = 513

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 2   IADEIQSGLGRAGKMLACDWEDVRPDVVILAKALGGGILPVSAVLADKD 50
           IADE+    GR G M  CD  +++PD+V LAKAL    +P+ A+L  ++
Sbjct: 305 IADEVICAFGRLGTMFGCDKYNIKPDLVTLAKALSSAYMPIGAILMSQE 353


>AT3G22200.1 | Symbols: POP2, GABA-T, HER1 | Pyridoxal phosphate
           (PLP)-dependent transferases superfamily protein |
           chr3:7835286-7838863 FORWARD LENGTH=504
          Length = 504

 Score = 52.0 bits (123), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 2   IADEIQSGLGRAGKMLACDWEDVRPDVVILAKALGGGILPVSAVLADKD 50
           IADE+    GR G M  CD  +++PD+V LAKAL    +P+ A+L  ++
Sbjct: 296 IADEVICAFGRLGTMFGCDKYNIKPDLVTLAKALSSAYMPIGAILMSQE 344