Miyakogusa Predicted Gene

Lj0g3v0279609.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0279609.2 Non Chatacterized Hit- tr|I1NIU3|I1NIU3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.5211
PE=,84.45,0,XRN_N,Putative 5-3 exonuclease; zf-CCHC,Zinc finger,
CCHC-type; no description,Zinc finger, CCHC-typ,CUFF.18603.2
         (681 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonucleas...   985   0.0  
AT1G75660.1 | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 | ...   495   e-140
AT5G42540.1 | Symbols: XRN2, AtXRN2 | exoribonuclease 2 | chr5:1...   475   e-134
AT5G42540.2 | Symbols: XRN2 | exoribonuclease 2 | chr5:17007513-...   474   e-134

>AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonuclease 4
           | chr1:20350300-20356650 FORWARD LENGTH=947
          Length = 947

 Score =  985 bits (2547), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/690 (69%), Positives = 547/690 (79%), Gaps = 13/690 (1%)

Query: 1   MGVP--------RSPLSISDVLEDEPAVVGDGVHLPIDLTKPNPNGMEFDNLYLDMNGIV 52
           MGVP        R P SISDV+E+EP   G G  +P+D+T+PNPNG EFDNLYLDMNGI+
Sbjct: 1   MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGII 60

Query: 53  HPCFHPDGKPAPATYDDVFKSIFDYVDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSXXX 112
           HPCFHP+GKPAPATYDDVFKS+F+Y+DHLF+LVRPRK+LYLAIDGVAPRAKMNQQRS   
Sbjct: 61  HPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRF 120

Query: 113 XXXXXXXXXXXXXXXXXXXXXXXXNLLSPKEKTETSDSNVITPGTQFMAALSVALQYYVQ 172
                                    +LS KEK ET DSNVITPGT FMA LSVALQYY+Q
Sbjct: 121 RAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGTPFMAILSVALQYYIQ 180

Query: 173 SRLNHNPGWQKIKVILTDSNAPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIML 232
           SRLNHNPGW+ +KVIL+DSN PGEGEHKIM YIRLQRNLPGF+PNTRHCLYGLDADLIML
Sbjct: 181 SRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240

Query: 233 SLATHEVHFSILREVITLPGQQDKCFSCGQVGHFAADCRGKPDTKTEDWNRADDIPIHKK 292
           SLATHEVHFSILREVIT PGQQ+KCF CGQ GHFA+DC GK  +     N A DIPIHKK
Sbjct: 241 SLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSN----NAAADIPIHKK 296

Query: 293 KYQFLNIWVLREYLQYELEIPNPPFEIDFERXXXXXXXXXXXXGNDFLPHMPTLEIREGA 352
           KYQFLNIWVLREYLQYEL IP+PPF I+FER            GNDFLPHMPTLEIREGA
Sbjct: 297 KYQFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGA 356

Query: 353 INLLMHIYRKEFTAVGGYLTHAGEVCLDRLEHFIQSVAVHEDQIFQKRVRVQQVMENNQE 412
           INLLMH+YRKEFTA+GGYLT +GEV LDR+EHFIQ+VAV+ED+IFQKR R++Q M+NN+E
Sbjct: 357 INLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEE 416

Query: 413 MRARARGVMPEEPRASLVDKVKLGDPGYKDRYYVEKFGVSSQKEIDKIKKDIVLKYVEGL 472
           M+ R+R    E P   + DK+KLG+PGYK+RYY EKF  ++ +E ++IK+D+VLKYVEGL
Sbjct: 417 MKQRSRRDPSEVPPEPIDDKIKLGEPGYKERYYAEKFSTTNPEETEQIKQDMVLKYVEGL 476

Query: 473 CWVCQYYYNGVSSWKWYYPYHYAPFASDLKDLPDLEIHFFRGEPFKPFDQLMGVLPALSS 532
           CWVC+YYY GV SW+W+YPYHYAPFASDLK+LPDLEI FF GEPFKPFDQLMG LPA SS
Sbjct: 477 CWVCRYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIGEPFKPFDQLMGTLPAASS 536

Query: 533 NALPKKYRDLMTD-SSPILHFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLAATRKIED 591
           NALP +YR LMTD SSPIL FYPADFE+DMNGKRFAWQG+AKLPFI+EK LLAATRK+E+
Sbjct: 537 NALPGEYRKLMTDPSSPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEE 596

Query: 592 TLTEEEQLRNSVMLDLLYVNRAHDLAPHILLYCKAYSQSPSHERCVSPIATNASGGMNGY 651
           TLT EEQ RNSVMLDLLYV+ AH L   IL Y   Y   P HE     I  N+S GMNG+
Sbjct: 597 TLTVEEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHECLPWMIDPNSSQGMNGF 656

Query: 652 LWLCERNVFSSIVSSPINGLQDLESNQVLN 681
           LW  ERN F + V SP+NGL  +E N+ LN
Sbjct: 657 LWFSERNGFQTRVDSPVNGLPCIEQNRALN 686


>AT1G75660.1 | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 |
           chr1:28408289-28414825 FORWARD LENGTH=1020
          Length = 1020

 Score =  495 bits (1274), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/383 (61%), Positives = 281/383 (73%), Gaps = 1/383 (0%)

Query: 24  GVHLPIDLTKPNPNGMEFDNLYLDMNGIVHPCFHPDGKPAPATYDDVFKSIFDYVDHLFS 83
           G+ +P+D +KPNPN +E+DNLYLDMNGI+HPCFHP+ +P+P T+++VF+ +FDY+D LF 
Sbjct: 31  GIKIPVDTSKPNPNNLEYDNLYLDMNGIIHPCFHPEDRPSPTTFEEVFQCMFDYIDRLFV 90

Query: 84  LVRPRKLLYLAIDGVAPRAKMNQQRSXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLSPKE 143
           +VRPRKLLY+AIDGVAPRAKMNQQRS                             L PK 
Sbjct: 91  MVRPRKLLYMAIDGVAPRAKMNQQRSRRFRSAKDASDAAAEEERLREEFEREGRRLPPKV 150

Query: 144 KTETSDSNVITPGTQFMAALSVALQYYVQSRLNHNPGWQKIKVILTDSNAPGEGEHKIME 203
            ++  DSNVITPGT+FM  LS+ALQYYV  RLNH+ GW+ IKVIL+D+N PGEGEHKIM 
Sbjct: 151 DSQVFDSNVITPGTEFMGVLSIALQYYVHLRLNHDVGWKNIKVILSDANVPGEGEHKIMS 210

Query: 204 YIRLQRNLPGFNPNTRHCLYGLDADLIMLSLATHEVHFSILREVITLPGQQDKCFSCGQV 263
           YIRLQRNLPGF+PNTRHCLYGLDADLIML LATHEVHFSILREV+  PGQQ++CF CGQ+
Sbjct: 211 YIRLQRNLPGFDPNTRHCLYGLDADLIMLGLATHEVHFSILREVVYTPGQQERCFLCGQM 270

Query: 264 GHFAADCRGKPDTKT-EDWNRADDIPIHKKKYQFLNIWVLREYLQYELEIPNPPFEIDFE 322
           GHFA++C GKP  +  E   + D     KK YQFL+IWVLREYL+ E+ IPNPPFEID E
Sbjct: 271 GHFASNCEGKPKKRAGESDEKGDGNDFVKKPYQFLHIWVLREYLELEMRIPNPPFEIDLE 330

Query: 323 RXXXXXXXXXXXXGNDFLPHMPTLEIREGAINLLMHIYRKEFTAVGGYLTHAGEVCLDRL 382
           R            GNDFLPHMPTLEIREGAINLLM +Y+KEF +  GYLT   +  L R+
Sbjct: 331 RIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRSFDGYLTDGCKPNLKRV 390

Query: 383 EHFIQSVAVHEDQIFQKRVRVQQ 405
           E FIQ+V   ED+IFQKR    Q
Sbjct: 391 EQFIQAVGSFEDKIFQKRAMQHQ 413



 Score =  298 bits (763), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 144/281 (51%), Positives = 198/281 (70%), Gaps = 8/281 (2%)

Query: 408 ENNQEMRARARGVMPEEPRA-----SLVDKVKLGDPGYKDRYYVEKFGVSSQKEIDKIKK 462
           EN +E++ + + ++ E+  A     +  DKVKLG PG+++RYY EKF V + +E+++++K
Sbjct: 501 ENKEELKTKLKELIREKSDAFNSDTTEEDKVKLGQPGWRERYYEEKFSVVTPEEMERVRK 560

Query: 463 DIVLKYVEGLCWVCQYYYNGVSSWKWYYPYHYAPFASDLKDLPDLEIHFFRGEPFKPFDQ 522
           D+VLKY EGLCWV  YY  GV SW+W+YPYHYAPFASDLKDL +++I F  G PFKPF+Q
Sbjct: 561 DVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGTPFKPFNQ 620

Query: 523 LMGVLPALSSNALPKKYRDLMTD-SSPILHFYPADFEIDMNGKRFAWQGVAKLPFIDEKK 581
           L+GV PA SS+ALP++YR LMTD +SPI+ FYP DFE+DMNGKRF+WQG+AKLPFIDE++
Sbjct: 621 LLGVFPAASSHALPERYRTLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDERR 680

Query: 582 LLAATRKIEDTLTEEEQLRNSVMLDLLYVNRAHDLAPHILLYCKAYSQSPSHERC--VSP 639
           LL A  ++E TLT+EE+ RNS M D+L++  +H LA  +        Q  + ER      
Sbjct: 681 LLEAVSEVEFTLTDEEKRRNSRMCDMLFIATSHRLAELVFSLDNHCRQLSARERVDFKVK 740

Query: 640 IATNASGGMNGYLWLCERNVFSSIVSSPINGLQDLESNQVL 680
           I    S GMNGYL  C       +  SP+ G++D+ +NQV+
Sbjct: 741 IKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVI 781


>AT5G42540.1 | Symbols: XRN2, AtXRN2 | exoribonuclease 2 |
           chr5:17007513-17014534 FORWARD LENGTH=1012
          Length = 1012

 Score =  475 bits (1222), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/429 (55%), Positives = 300/429 (69%), Gaps = 15/429 (3%)

Query: 1   MGVP--------RSPLSISDVLEDEP-AVVGDGVHLPIDLTKPNPNGMEFDNLYLDMNGI 51
           MGVP        R PL+I +V+E+EP  V G GV +PID +KPNPNG E+DNLYLDMNGI
Sbjct: 1   MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGI 60

Query: 52  VHPCFHPDGKPAPATYDDVFKSIFDYVDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSXX 111
           +HPCFHP+ KP+P T+ +VF+ +FDY+D LF +VRPRKLL++AIDGVAPRAKMNQQR+  
Sbjct: 61  IHPCFHPEDKPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARR 120

Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXNLLSPKEKTETSDSNVITPGTQFMAALSVALQYYV 171
                                      L PK  ++  DSNVITPGT+FMA LS AL+YY+
Sbjct: 121 FRAAKDAAEAAAEEEQLREEFEREGKKLPPKVDSQVFDSNVITPGTEFMATLSFALRYYI 180

Query: 172 QSRLNHNPGWQKIKVILTDSNAPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIM 231
             RLN +PGW+ IKVIL+D+N PGEGEHKIM YIR  +N PG+NPNT HCLYGLDADLIM
Sbjct: 181 HVRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIM 240

Query: 232 LSLATHEVHFSILREVITLPGQQDKCFSCGQVGHFAADCRGKPDTKTEDW--NRADDIPI 289
           LSLATHE+HFSILREV+  PG++ KCF CGQ GH AADC GK   KT +   N   D+ +
Sbjct: 241 LSLATHEIHFSILREVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVVV 300

Query: 290 HKKKYQFLNIWVLREYLQYELEIPNPPFEIDFERXXXXXXXXXXXXGNDFLPHMPTLEIR 349
            KK Y+F+NIW+LREYL+++++IP     +D  R            GNDFLPHMPTLEIR
Sbjct: 301 -KKPYEFVNIWILREYLEHDMQIPGAKKNLD--RLIDDFIFICFFVGNDFLPHMPTLEIR 357

Query: 350 EGAINLLMHIYRKEFTAVGGYLTHAGEVCLDRLEHFIQSVAVHEDQIFQKRVRVQQVMEN 409
           EGAI LLM +Y+ +F +   YLT + ++ L  +E FI++V ++E+QIFQKR +VQQ  ++
Sbjct: 358 EGAIELLMSVYKNKFRSAKKYLTDSSKLNLRNVERFIKAVGMYENQIFQKRAQVQQ-RQS 416

Query: 410 NQEMRARAR 418
            +  R +AR
Sbjct: 417 ERFRRDKAR 425



 Score =  273 bits (697), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 130/253 (51%), Positives = 176/253 (69%), Gaps = 3/253 (1%)

Query: 431 DKVKLGDPGYKDRYYVEKFGVSSQKEIDKIKKDIVLKYVEGLCWVCQYYYNGVSSWKWYY 490
           DKVKL   G+++RYY EKF   S +E+++I++D+VLKY EGLCW+  YYY+GV SW W+Y
Sbjct: 521 DKVKLNKVGWRERYYEEKFAAKSVEEMEQIRRDVVLKYTEGLCWIMHYYYHGVCSWNWFY 580

Query: 491 PYHYAPFASDLKDLPDLEIHFFRGEPFKPFDQLMGVLPALSSNALPKKYRDLMTD-SSPI 549
           PYHYAPFASDLK L  L+I F  G PFKPF+QL+ VLP+ S++ALP+ YR LMT+  SPI
Sbjct: 581 PYHYAPFASDLKGLEKLDIKFELGSPFKPFNQLLAVLPSASAHALPECYRSLMTNPDSPI 640

Query: 550 LHFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLAATRKIEDTLTEEEQLRNSVMLDLLY 609
             FYPADFEIDMNGKR++WQG++KLPF++EK+LL A  ++E +LT EE  RNS + D+L+
Sbjct: 641 ADFYPADFEIDMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTNEEIRRNSALFDMLF 700

Query: 610 VNRAHDLAPHILLYCKAYSQSPSHERC--VSPIATNASGGMNGYLWLCERNVFSSIVSSP 667
           V  +H L   I       +   + ER   +  I    S GMNGY+  C  +   S   S 
Sbjct: 701 VVASHPLGELIRSLNSRTNNLSNEERATIIEKIDPGLSDGMNGYIASCGGDSQPSCFCST 760

Query: 668 INGLQDLESNQVL 680
           + G++D+ +NQV+
Sbjct: 761 VEGMEDVLTNQVI 773


>AT5G42540.2 | Symbols: XRN2 | exoribonuclease 2 |
           chr5:17007513-17014534 FORWARD LENGTH=1023
          Length = 1023

 Score =  474 bits (1220), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/429 (55%), Positives = 300/429 (69%), Gaps = 15/429 (3%)

Query: 1   MGVP--------RSPLSISDVLEDEP-AVVGDGVHLPIDLTKPNPNGMEFDNLYLDMNGI 51
           MGVP        R PL+I +V+E+EP  V G GV +PID +KPNPNG E+DNLYLDMNGI
Sbjct: 1   MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGI 60

Query: 52  VHPCFHPDGKPAPATYDDVFKSIFDYVDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSXX 111
           +HPCFHP+ KP+P T+ +VF+ +FDY+D LF +VRPRKLL++AIDGVAPRAKMNQQR+  
Sbjct: 61  IHPCFHPEDKPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARR 120

Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXNLLSPKEKTETSDSNVITPGTQFMAALSVALQYYV 171
                                      L PK  ++  DSNVITPGT+FMA LS AL+YY+
Sbjct: 121 FRAAKDAAEAAAEEEQLREEFEREGKKLPPKVDSQVFDSNVITPGTEFMATLSFALRYYI 180

Query: 172 QSRLNHNPGWQKIKVILTDSNAPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIM 231
             RLN +PGW+ IKVIL+D+N PGEGEHKIM YIR  +N PG+NPNT HCLYGLDADLIM
Sbjct: 181 HVRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIM 240

Query: 232 LSLATHEVHFSILREVITLPGQQDKCFSCGQVGHFAADCRGKPDTKTEDW--NRADDIPI 289
           LSLATHE+HFSILREV+  PG++ KCF CGQ GH AADC GK   KT +   N   D+ +
Sbjct: 241 LSLATHEIHFSILREVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVVV 300

Query: 290 HKKKYQFLNIWVLREYLQYELEIPNPPFEIDFERXXXXXXXXXXXXGNDFLPHMPTLEIR 349
            KK Y+F+NIW+LREYL+++++IP     +D  R            GNDFLPHMPTLEIR
Sbjct: 301 -KKPYEFVNIWILREYLEHDMQIPGAKKNLD--RLIDDFIFICFFVGNDFLPHMPTLEIR 357

Query: 350 EGAINLLMHIYRKEFTAVGGYLTHAGEVCLDRLEHFIQSVAVHEDQIFQKRVRVQQVMEN 409
           EGAI LLM +Y+ +F +   YLT + ++ L  +E FI++V ++E+QIFQKR +VQQ  ++
Sbjct: 358 EGAIELLMSVYKNKFRSAKKYLTDSSKLNLRNVERFIKAVGMYENQIFQKRAQVQQ-RQS 416

Query: 410 NQEMRARAR 418
            +  R +AR
Sbjct: 417 ERFRRDKAR 425



 Score =  266 bits (681), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 129/264 (48%), Positives = 175/264 (66%), Gaps = 14/264 (5%)

Query: 431 DKVKLGDPGYKDRYYVEKFGVSSQKEIDKIKKDIVLKYVEGLCWVCQYYYNGVSSWKWYY 490
           DKVKL   G+++RYY EKF   S +E+++I++D+VLKY EGLCW+  YYY+GV SW W+Y
Sbjct: 521 DKVKLNKVGWRERYYEEKFAAKSVEEMEQIRRDVVLKYTEGLCWIMHYYYHGVCSWNWFY 580

Query: 491 PYHYAPFASDLKDLPDLEIHFFRGEPFKPFDQLMGVLPALSSNALPKKYRDLMTD-SSPI 549
           PYHYAPFASDLK L  L+I F  G PFKPF+QL+ VLP+ S++ALP+ YR LMT+  SPI
Sbjct: 581 PYHYAPFASDLKGLEKLDIKFELGSPFKPFNQLLAVLPSASAHALPECYRSLMTNPDSPI 640

Query: 550 LHFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLAATRKIEDTLTEEEQLRNSVMLDLLY 609
             FYPADFEIDMNGKR++WQG++KLPF++EK+LL A  ++E +LT EE  RNS + D+L+
Sbjct: 641 ADFYPADFEIDMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTNEEIRRNSALFDMLF 700

Query: 610 VNRAHDLAPHILLYCKAYSQSPSHERC-------------VSPIATNASGGMNGYLWLCE 656
           V  +H L   I       +   + ER              +       S GMNGY+  C 
Sbjct: 701 VVASHPLGELIRSLNSRTNNLSNEERATIIEKIDPGLSEHIQKFLDVCSDGMNGYIASCG 760

Query: 657 RNVFSSIVSSPINGLQDLESNQVL 680
            +   S   S + G++D+ +NQV+
Sbjct: 761 GDSQPSCFCSTVEGMEDVLTNQVI 784