Miyakogusa Predicted Gene

Lj0g3v0278299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0278299.1 CUFF.18494.1
         (269 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissu...   323   6e-89
AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase | chr1:204...   309   1e-84
AT1G48650.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   163   1e-40
AT1G48650.2 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   163   1e-40
AT2G35920.1 | Symbols:  | RNA helicase family protein | chr2:150...   157   1e-38
AT5G04895.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   156   1e-38
AT2G01130.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   150   6e-37
AT1G58060.1 | Symbols:  | RNA helicase family protein | chr1:214...   111   6e-25
AT1G58050.1 | Symbols:  | RNA helicase family protein | chr1:214...   106   1e-23
AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protei...    95   6e-20
AT2G47250.1 | Symbols:  | RNA helicase family protein | chr2:193...    92   3e-19
AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein | chr1...    91   6e-19
AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family prote...    91   6e-19
AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein | c...    91   1e-18
AT3G62310.1 | Symbols:  | RNA helicase family protein | chr3:230...    89   3e-18
AT4G16680.1 | Symbols:  | P-loop containing nucleoside triphosph...    89   3e-18
AT3G26560.1 | Symbols:  | ATP-dependent RNA helicase, putative |...    86   2e-17
AT1G27900.1 | Symbols:  | RNA helicase family protein | chr1:971...    75   6e-14
AT2G47680.1 | Symbols:  | zinc finger (CCCH type) helicase famil...    64   1e-10
AT4G18465.1 | Symbols:  | RNA helicase family protein | chr4:101...    64   1e-10
AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protei...    61   7e-10
AT4G01020.1 | Symbols:  | helicase domain-containing protein / I...    60   2e-09
AT5G10370.1 | Symbols:  | helicase domain-containing protein / I...    58   6e-09
AT1G26370.1 | Symbols:  | RNA helicase family protein | chr1:912...    58   9e-09

>AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue
           and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299
          Length = 1299

 Score =  323 bits (829), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 165/278 (59%), Positives = 204/278 (73%), Gaps = 21/278 (7%)

Query: 1   MWC-KGEVCKIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCT 59
           MW  K E CKIVCTQPR ISA+SVSERISCERGESIG N+GYK+ L+ +GGR SS++ CT
Sbjct: 228 MWSSKRETCKIVCTQPRRISAMSVSERISCERGESIGENIGYKVRLQSKGGRHSSVVFCT 287

Query: 60  TEVLLKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHL 119
             +LL+VLV KGS           +S ITHII+DEIHERD YSD +LAI+R +LPSNPHL
Sbjct: 288 NGILLRVLVGKGSV--------SSVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHL 339

Query: 120 HLILMGASLDXXXXXRFSRYFGEFPIIHVPGLTYPVRSYYLEDVLSIVKLGEDNHLDSNH 179
            LILM A+LD     RFS YFG  P++ VPG TYPVR+ YLEDVLSI+K G DNHL S +
Sbjct: 340 RLILMSATLD---AERFSGYFGGCPVVRVPGFTYPVRTLYLEDVLSILKSGGDNHLSSTN 396

Query: 180 --------ELSQEDKISLDKAINLAWSNDDWGPLLEFVFS-GGLNVFNYQHSLTGLNPLM 230
                   +L+ EDK++LD+AI LAW+ND++  LL+ V S G   ++NYQH  T L PLM
Sbjct: 397 LSISDHKLDLTDEDKLALDEAIILAWTNDEFDALLDLVSSRGSHEIYNYQHQSTWLTPLM 456

Query: 231 VFAGKGKVGDMCMLLSIGANCHLRTKDGTTALDIAVKE 268
           VFAGKG++ D+CMLLS GA+  L++KDG TAL++A  E
Sbjct: 457 VFAGKGRISDVCMLLSFGADWSLKSKDGMTALELAEAE 494


>AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase |
           chr1:2040567-2047333 FORWARD LENGTH=1576
          Length = 1576

 Score =  309 bits (791), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 152/272 (55%), Positives = 199/272 (73%), Gaps = 15/272 (5%)

Query: 1   MW-CKGEVCKIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCT 59
           MW  K E CKI+CTQPR ISAISVS+RIS ERGE+IG  VGYK+ L+  GGR+SS++ CT
Sbjct: 258 MWHSKKEACKIICTQPRRISAISVSDRISWERGETIGRTVGYKVRLQSEGGRESSVVFCT 317

Query: 60  TEVLLKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHL 119
             +LL+VL+ KG            +  ITHII+DEIHERD YSD +L ILR +LPSNPHL
Sbjct: 318 NGILLRVLIGKG--------VNSSVPDITHIIVDEIHERDSYSDFMLMILRDLLPSNPHL 369

Query: 120 HLILMGASLDXXXXXRFSRYFGEFPIIHVPGLTYPVRSYYLEDVLSIVKLGEDNHLDS-- 177
            LILM A+LD     RFS YFG  P++ VPG TYPVR+++L+D LS++   +++HL S  
Sbjct: 370 RLILMSATLD---AERFSEYFGGCPVVRVPGFTYPVRTFFLDDALSVLNSDKNSHLLSAV 426

Query: 178 NHELSQEDKISLDKAINLAWSNDDWGPLLEFVFS-GGLNVFNYQHSLTGLNPLMVFAGKG 236
             +   EDK+SLD+AI+LAW+ND++  L++ V S G    +NYQ+S TGL PLMVFAGKG
Sbjct: 427 KRDFKDEDKVSLDEAIDLAWTNDEFDCLVDLVSSEGSHEAYNYQNSTTGLTPLMVFAGKG 486

Query: 237 KVGDMCMLLSIGANCHLRTKDGTTALDIAVKE 268
           +V D+C LLS+GA+C L++K+G TAL++A KE
Sbjct: 487 RVSDVCKLLSVGADCTLKSKEGITALELAEKE 518


>AT1G48650.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr1:17989670-17995169 REVERSE LENGTH=1197
          Length = 1197

 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/180 (47%), Positives = 112/180 (62%), Gaps = 16/180 (8%)

Query: 3   CKGEVCKIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEV 62
            +G  C I+CTQPR ISAISVSER++ ERGE IG +VGYK+ LE   GR + ++ CTT V
Sbjct: 344 ARGATCSIICTQPRRISAISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRLLFCTTGV 403

Query: 63  LLKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLI 122
           LL+ L+   S           L  +TH+++DEIHER    D LL +L+ +LP  P L LI
Sbjct: 404 LLRRLLVDRS-----------LKGVTHVVVDEIHERGMNEDFLLIVLKDLLPRRPDLKLI 452

Query: 123 LMGASLDXXXXXRFSRYFGEFPIIHVPGLTYPVRSYYLEDVL--SIVKLGEDNHLDSNHE 180
           LM A+L+      FS YFG  P +H+PG TYPVR+++LED L  S  +L   N +D   E
Sbjct: 453 LMSATLNAEL---FSSYFGGAPAMHIPGFTYPVRAHFLEDYLETSGYRLTTYNQIDDYGE 509


>AT1G48650.2 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr1:17989517-17995169 REVERSE LENGTH=1206
          Length = 1206

 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/180 (47%), Positives = 112/180 (62%), Gaps = 16/180 (8%)

Query: 3   CKGEVCKIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEV 62
            +G  C I+CTQPR ISAISVSER++ ERGE IG +VGYK+ LE   GR + ++ CTT V
Sbjct: 344 ARGATCSIICTQPRRISAISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRLLFCTTGV 403

Query: 63  LLKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLI 122
           LL+ L+   S           L  +TH+++DEIHER    D LL +L+ +LP  P L LI
Sbjct: 404 LLRRLLVDRS-----------LKGVTHVVVDEIHERGMNEDFLLIVLKDLLPRRPDLKLI 452

Query: 123 LMGASLDXXXXXRFSRYFGEFPIIHVPGLTYPVRSYYLEDVL--SIVKLGEDNHLDSNHE 180
           LM A+L+      FS YFG  P +H+PG TYPVR+++LED L  S  +L   N +D   E
Sbjct: 453 LMSATLNAEL---FSSYFGGAPAMHIPGFTYPVRAHFLEDYLETSGYRLTTYNQIDDYGE 509


>AT2G35920.1 | Symbols:  | RNA helicase family protein |
           chr2:15075674-15080506 FORWARD LENGTH=995
          Length = 995

 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 105/161 (65%), Gaps = 14/161 (8%)

Query: 4   KGEVCKIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVL 63
           +G  C I+CTQPR ISAISV+ RIS ERGESIG +VGY+I LE +   Q+ ++ CTT VL
Sbjct: 274 RGADCNIICTQPRRISAISVASRISAERGESIGESVGYQIRLESKRSDQTRLLFCTTGVL 333

Query: 64  LKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLIL 123
           L+ L+              +L++++H+++DEIHER    D LL ILR +LP  P L LIL
Sbjct: 334 LRRLIE-----------DPNLTNVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 382

Query: 124 MGASLDXXXXXRFSRYFGEFPIIHVPGLTYPVRSYYLEDVL 164
           M A+++      FS YFG  P +H+PG T+PV   +LEDVL
Sbjct: 383 MSATINADM---FSTYFGNSPTMHIPGFTFPVAELFLEDVL 420


>AT5G04895.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr5:1428796-1434516 FORWARD LENGTH=1161
          Length = 1161

 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/175 (43%), Positives = 113/175 (64%), Gaps = 16/175 (9%)

Query: 4   KGEVCKIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVL 63
           +G  C I+CTQPR ISA++VSER+S ERGE +G  VG+K+ LE   G+ + ++ CT+ +L
Sbjct: 306 RGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMRGKNTHLLFCTSGIL 365

Query: 64  LKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLIL 123
           L+ L+S             +L+ +TH+ +DEIHER    D L+ +L+++LP  P L L+L
Sbjct: 366 LRRLLS-----------DRNLNGVTHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLVL 414

Query: 124 MGASLDXXXXXRFSRYFGEFPIIHVPGLTYPVRSYYLEDVLSIV--KLGEDNHLD 176
           M A+L+      FS Y+G  P IH+PG T+PV++++LEDVL I   KL   N +D
Sbjct: 415 MSATLNAEL---FSNYYGGAPTIHIPGFTHPVKAHFLEDVLEITGYKLTSFNQVD 466


>AT2G01130.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr2:88847-94635 REVERSE LENGTH=1113
          Length = 1113

 Score =  150 bits (380), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 116/192 (60%), Gaps = 19/192 (9%)

Query: 4   KGEVCKIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVL 63
           +G    I+CTQPR ISA+SVSER++ ERGE +G +VGYK+ LE   GR + ++ CTT +L
Sbjct: 266 RGAFSSIICTQPRRISAMSVSERVAYERGEQLGESVGYKVRLEGVKGRDTRLLFCTTGIL 325

Query: 64  LKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLIL 123
           L+ L+              +L  +TH+I+DEIHER    D LL IL+ +L     L LIL
Sbjct: 326 LRRLL-----------VDRNLRGVTHVIVDEIHERGMNEDFLLIILKDLLSRRSELKLIL 374

Query: 124 MGASLDXXXXXRFSRYFGEFPIIHVPGLTYPVRSYYLEDVLSIV--KLGEDNHLDSNHEL 181
           M A+LD      FS YFG   +I++PG TYPVRS++LED+L +   +L   N +D   + 
Sbjct: 375 MSATLDAEL---FSSYFGGAGVIYIPGFTYPVRSHFLEDILEMTRYRLTPYNQID---DY 428

Query: 182 SQEDKISLDKAI 193
            QE    ++K I
Sbjct: 429 GQERTWKMNKQI 440


>AT1G58060.1 | Symbols:  | RNA helicase family protein |
           chr1:21489480-21501775 REVERSE LENGTH=1459
          Length = 1459

 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 24/169 (14%)

Query: 5   GEVCKIVCTQPRHISAISVSERISCERGESI----GHNVGYKIPLECRGGRQSSIILCTT 60
           G  C I+CTQPR I+AISV++R++ ER ES        VGY++ LE     ++ ++ CTT
Sbjct: 661 GGYCNIICTQPRRIAAISVAQRVADERCESSPGLDDSLVGYQVRLESARSDKTRLLFCTT 720

Query: 61  EVLLKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLP------ 114
            +LL+ L        RT      L+ +THII+DE+HER    D LL IL+ ++       
Sbjct: 721 GILLRKLAGD-----RT------LNDVTHIIVDEVHERSLLGDFLLIILKSLIEKQSCDN 769

Query: 115 SNPHLHLILMGASLDXXXXXRFSRYFGEFPIIHVPGLTYPVRSYYLEDV 163
           ++  L +ILM A++D      FSRYFG  P+I   G T+PV +++LE++
Sbjct: 770 TSRKLKVILMSATVDADL---FSRYFGHCPVITAQGRTHPVTTHFLEEI 815


>AT1G58050.1 | Symbols:  | RNA helicase family protein |
           chr1:21478590-21487839 REVERSE LENGTH=1417
          Length = 1417

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 104/195 (53%), Gaps = 29/195 (14%)

Query: 5   GEVCKIVCTQPRHISAISVSERISCERGESI----GHNVGYKIPLECRGGRQSSIILCTT 60
           G  C I+CTQPR   AI+V++R++ ER E         V Y++  +     ++ ++ CTT
Sbjct: 644 GGYCNIICTQPR---AITVAQRVADERCEPPPGFDNSVVAYQVRHQNARSDKTRLLFCTT 700

Query: 61  EVLLKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSN---- 116
            +LL+ LV   +           L  +THII+DE+HER    D LL IL+ ++       
Sbjct: 701 GILLRKLVGDTT-----------LKDVTHIIVDEVHERSLMGDFLLIILKSLIEKQSWDN 749

Query: 117 --PHLHLILMGASLDXXXXXRFSRYFGEFPIIHVPGLTYPVRSYYLEDVLSIVK--LGED 172
             P L +ILM A++D     +FSRYFG+ PII   G T+PV +Y+LED+    K  L  D
Sbjct: 750 ALPKLKVILMSATVDAH---QFSRYFGQCPIITAQGRTHPVTTYFLEDIYERTKYLLASD 806

Query: 173 NHLDSNHELSQEDKI 187
           +    + + S  DK+
Sbjct: 807 SPAALSSDTSITDKL 821


>AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protein |
           chr2:14872728-14879615 FORWARD LENGTH=1044
          Length = 1044

 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 14/147 (9%)

Query: 9   KIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVLLKVLV 68
           K+ CTQPR ++A+SV+ R++ E G  +GH VGY I  E           CT+E  +   +
Sbjct: 451 KVGCTQPRRVAAMSVAARVAQEMGGKLGHEVGYSIRFED----------CTSEKTILKYM 500

Query: 69  SKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLILMGASL 128
           + G   LR    + DL S + II+DE HER   +D+L  +++ +  + P L L++  A++
Sbjct: 501 TDG-MLLRELLGEPDLGSYSVIIVDEAHERTLRTDILFGLVKDIARARPDLKLLISSATM 559

Query: 129 DXXXXXRFSRYFGEFPIIHVPGLTYPV 155
           D     +FS +F + PI   PG  YPV
Sbjct: 560 D---AEKFSDFFDQAPIFRFPGRRYPV 583


>AT2G47250.1 | Symbols:  | RNA helicase family protein |
           chr2:19399923-19402981 REVERSE LENGTH=729
          Length = 729

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 16/160 (10%)

Query: 4   KGEVCKIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLE-CRGGRQSSIILCTTEV 62
           KG    + CTQPR ++A+SVS R++ E   SIG  VGY I  E C   R           
Sbjct: 113 KGRKWLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSR----------T 162

Query: 63  LLKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLI 122
           +LK L       LR   A   L     II+DE HER   +D+L  +L+++L + P L L+
Sbjct: 163 MLKYLTD--GMLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLV 220

Query: 123 LMGASLDXXXXXRFSRYFGEFPIIHVPGLTYPVRSYYLED 162
           +M A+L+     +F  YF   P++ VPG  +PV  +Y ++
Sbjct: 221 VMSATLE---AEKFQEYFSGAPLMKVPGRLHPVEIFYTQE 257


>AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein |
           chr1:11742356-11749286 REVERSE LENGTH=1034
          Length = 1034

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 14/151 (9%)

Query: 9   KIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVLLKVLV 68
           K+ CTQPR ++A+SV+ R++ E G  +GH VGY I  E           CT++  +   +
Sbjct: 441 KVGCTQPRRVAAMSVAARVAQEMGVKLGHEVGYSIRFED----------CTSDKTVLKYM 490

Query: 69  SKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLILMGASL 128
           + G   LR    + DL+S + +I+DE HER   +D+L  +++ +    P L L++  A++
Sbjct: 491 TDGML-LRELLGEPDLASYSVVIVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATM 549

Query: 129 DXXXXXRFSRYFGEFPIIHVPGLTYPVRSYY 159
           D     +FS YF   PI   PG  YPV   Y
Sbjct: 550 D---AEKFSDYFDTAPIFSFPGRRYPVEINY 577


>AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family protein
           | chr1:11742356-11749286 REVERSE LENGTH=1044
          Length = 1044

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 14/151 (9%)

Query: 9   KIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVLLKVLV 68
           K+ CTQPR ++A+SV+ R++ E G  +GH VGY I  E           CT++  +   +
Sbjct: 451 KVGCTQPRRVAAMSVAARVAQEMGVKLGHEVGYSIRFED----------CTSDKTVLKYM 500

Query: 69  SKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLILMGASL 128
           + G   LR    + DL+S + +I+DE HER   +D+L  +++ +    P L L++  A++
Sbjct: 501 TDGML-LRELLGEPDLASYSVVIVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATM 559

Query: 129 DXXXXXRFSRYFGEFPIIHVPGLTYPVRSYY 159
           D     +FS YF   PI   PG  YPV   Y
Sbjct: 560 D---AEKFSDYFDTAPIFSFPGRRYPVEINY 587


>AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein |
           chr5:4122747-4128660 FORWARD LENGTH=1255
          Length = 1255

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 14/150 (9%)

Query: 10  IVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVLLKVLVS 69
           + CTQPR ++A+SV++R+S E    +G  +GY I  E   G  + I   T  VLL+  + 
Sbjct: 606 VGCTQPRRVAAMSVAKRVSEEMETELGDKIGYAIRFEDVTGPNTVIKYMTDGVLLRETLK 665

Query: 70  KGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLILMGASLD 129
                        DL     ++MDE HER   +D+L  IL++++       LI+  A+L+
Sbjct: 666 DS-----------DLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLN 714

Query: 130 XXXXXRFSRYFGEFPIIHVPGLTYPVRSYY 159
                +FS +FG  PI ++PG T+PV   Y
Sbjct: 715 ---AQKFSNFFGSVPIFNIPGRTFPVNILY 741


>AT3G62310.1 | Symbols:  | RNA helicase family protein |
           chr3:23057516-23060561 REVERSE LENGTH=726
          Length = 726

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 16/152 (10%)

Query: 12  CTQPRHISAISVSERISCERGESIGHNVGYKIPLE-CRGGRQSSIILCTTEVLLKVLVSK 70
           CTQPR ++A+SVS R++ E   +IG  VGY I  E C   R           +LK L   
Sbjct: 117 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPR----------TVLKYLTD- 165

Query: 71  GSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLILMGASLDX 130
               LR   A   L     II+DE HER   +D+L  +L+++L + P L L++M A+L+ 
Sbjct: 166 -GMLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE- 223

Query: 131 XXXXRFSRYFGEFPIIHVPGLTYPVRSYYLED 162
               +F  YF   P++ VPG  +PV  +Y ++
Sbjct: 224 --AEKFQDYFSGAPLMKVPGRLHPVEIFYTQE 253


>AT4G16680.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr4:9388613-9390774
           REVERSE LENGTH=656
          Length = 656

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 22/167 (13%)

Query: 9   KIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVLLKVLV 68
           KI CTQPR ++A+SV+ R++ E G  +GH VGY I  E           CT+E  +   +
Sbjct: 262 KIGCTQPRRVAAMSVASRVAQEVGVKLGHEVGYSIRFED----------CTSEKTVIKYM 311

Query: 69  SKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLILMGASL 128
           + G   LR    +  L S + II+DE HER   +D+L A+++ +    P L LI+  A+L
Sbjct: 312 TDG-MLLRELLIEPKLDSYSVIIIDEAHERTLSTDILFALVKDVAKVRPDLRLIISSATL 370

Query: 129 DXXXXXRFSRYFGEFPIIHVPGLTYPVRSY--------YLEDVLSIV 167
           +     +FS YF    I  +PG  YPV           YLE V+  V
Sbjct: 371 E---AKKFSEYFDSARIYLIPGRRYPVEKLFRKCPEPDYLETVIRTV 414


>AT3G26560.1 | Symbols:  | ATP-dependent RNA helicase, putative |
           chr3:9750122-9753719 REVERSE LENGTH=1168
          Length = 1168

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 21/169 (12%)

Query: 9   KIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVLLKVLV 68
           KI CTQPR ++A+SV++R++ E G  +G  VGY I  E   G  + I   T  +LL+ ++
Sbjct: 562 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREIL 621

Query: 69  SKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLILMGASL 128
                        ++LS  + I++DE HER  ++D+L  +L++++     L LI+  A+L
Sbjct: 622 -----------IDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLDLRLIVTSATL 670

Query: 129 DXXXXXRFSRYFGEFPIIHVPGLTYPVRSYYLEDVLSIVKLGEDNHLDS 177
           D     +FS YF    I  +PG T+PV   Y        K  E ++LD+
Sbjct: 671 D---AEKFSGYFFNCNIFTIPGRTFPVEILY-------TKQPETDYLDA 709


>AT1G27900.1 | Symbols:  | RNA helicase family protein |
           chr1:9715615-9720346 REVERSE LENGTH=700
          Length = 700

 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 15/151 (9%)

Query: 10  IVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVLLKVLVS 69
           I  TQPR ++A+SV+ R++ E    +G +VGY I  E R   ++ I   T  VLL+  +S
Sbjct: 52  IAITQPRRVAAVSVARRVAQELDVPLGEDVGYAIRFEDRTTSKTRIKYLTDGVLLRESLS 111

Query: 70  KGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLP-SNPHLHLILMGASL 128
                       DD S    II+DE HER   +D+LL ++++++     +  +++  A+L
Sbjct: 112 NPML--------DDYSV---IILDEAHERSLNTDILLGLVKRLVRIRASNFKVLITSATL 160

Query: 129 DXXXXXRFSRYFGEFPIIHVPGLTYPVRSYY 159
           D     + S +F   P+++VPG  YPV   Y
Sbjct: 161 D---GEKVSEFFSGCPVLNVPGKLYPVEILY 188


>AT2G47680.1 | Symbols:  | zinc finger (CCCH type) helicase family
           protein | chr2:19545828-19550871 REVERSE LENGTH=1015
          Length = 1015

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 23/179 (12%)

Query: 4   KGEVCKIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVL 63
           +  +  I+CTQPR  + ++V++ ++  R   +G  +GY I         S I+  T  VL
Sbjct: 65  EANMAPILCTQPRRFAVVAVAKMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVL 124

Query: 64  LKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLIL 123
           L  ++ KG   L+ +           II+DE+HER   SDL+L  ++Q L  N  L ++L
Sbjct: 125 LDEMLDKGLNALKYKV----------IILDEVHERSVESDLVLVCVKQFLMKNNDLRVVL 174

Query: 124 MGASLDXXXXXRFSRYFGEF------PIIHVPG----LTYPVRSYYLEDVLSIVKLGED 172
           M A+ D     R+  YF E        ++ +P       +  R  YLE V  ++ +  D
Sbjct: 175 MSATAD---ITRYRDYFKELGRGERVEVVAIPSPDQRTIFQRRVLYLEQVAGLLGVSSD 230


>AT4G18465.1 | Symbols:  | RNA helicase family protein |
           chr4:10197056-10201611 FORWARD LENGTH=695
          Length = 695

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 25/178 (14%)

Query: 2   WCKGEVCKIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTE 61
           W +G    I CTQPR ++  +VS R++ E G ++G  VGY I  E            TT 
Sbjct: 90  WAEGGRV-IACTQPRRLAVQAVSARVAEEMGVNLGEEVGYTIRFEDH----------TTS 138

Query: 62  VLLKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHL 121
            +  V        +R       L+  + I++DE HER   +D+LL +L+++    P L L
Sbjct: 139 GVTSVKFLTDGVLIREMMEDPLLTKYSVIMIDEAHERSISTDILLGLLKKIQRRRPELRL 198

Query: 122 ILMGASLDXXXXXRF-----SRYF--GEFP-------IIHVPGLTYPVRSYYLEDVLS 165
           I+  A+++      F      R+   G  P       I+ V G  + V+ +Y+E+ +S
Sbjct: 199 IISSATIEAKTMSNFFNSSKKRHAPEGSTPGPKLEPAILSVEGRGFSVKIHYVEEPVS 256


>AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protein |
           chr1:12099738-12104108 REVERSE LENGTH=1237
          Length = 1237

 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 35/186 (18%)

Query: 10  IVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVLLKVLVS 69
           I  TQPR ++ ++ ++R++ E G  +G  VG+++  + + G  SSI   T  +LL+ +  
Sbjct: 295 IGITQPRRVAVLATAKRVAFELGVRLGKEVGFQVRYDKKIGENSSIKFMTDGILLREI-- 352

Query: 70  KGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPH----------- 118
           +    LR  S          II+DE HER   +D+L+ +L +++                
Sbjct: 353 QNDFLLRRYSV---------IILDEAHERSLNTDILIGMLTRVIKIRQEYYEEQQKSLQS 403

Query: 119 ------------LHLILMGASLDXXXXXRFSRYFGEF-PIIHVPGLTYPVRSYYLEDVLS 165
                       L LILM A+L         R F    P+I VP   YPV  ++ +    
Sbjct: 404 GGTVTSECQITPLKLILMSATLRVEDFVSGKRLFPNIPPLIEVPTRQYPVTIHFSKKTEI 463

Query: 166 IVKLGE 171
           +  +GE
Sbjct: 464 VDYIGE 469


>AT4G01020.1 | Symbols:  | helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           | chr4:439086-445043 FORWARD LENGTH=1787
          Length = 1787

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 13/150 (8%)

Query: 10  IVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVLLKVLVS 69
           IVCTQPR I+A+++++R+  E       N     P              T E+  KV+  
Sbjct: 351 IVCTQPRKIAAMTLTDRVREESSGCYEENTVSCTP----------TFSSTEEISSKVVYM 400

Query: 70  KGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLILMGASLD 129
             +C L+       LS I+ +I+DE HER   +DLLLA+LR++L     L L++M A+ D
Sbjct: 401 TDNCLLQHYMKDRSLSGISCVIIDEAHERSLNTDLLLALLRKLLSRRIDLRLVIMSATAD 460

Query: 130 XXXXXRFSRYFGEFPIIHVPGLTYPVRSYY 159
                + S+Y  +  I+HV G  +PV   Y
Sbjct: 461 ---ANQLSQYLFDCGILHVNGRNFPVEIVY 487


>AT5G10370.1 | Symbols:  | helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           | chr5:3261245-3267188 FORWARD LENGTH=1775
          Length = 1775

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 13/150 (8%)

Query: 10  IVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTEVLLKVLVS 69
           IVCTQPR I+A+++++R+  E       N     P              T E+  KV+  
Sbjct: 354 IVCTQPRKIAAMTLADRVREESSGCYEENTVSCTP----------TFSSTEEISSKVVYM 403

Query: 70  KGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILRQMLPSNPHLHLILMGASLD 129
             +C L+       LS I+ +I+DE HER   +DLLLA+L+++L     L L++M A+ D
Sbjct: 404 TDNCLLQHYMKDRSLSGISCVIIDEAHERSLNTDLLLALLKKLLSRRIDLRLVIMSATAD 463

Query: 130 XXXXXRFSRYFGEFPIIHVPGLTYPVRSYY 159
                + S+YF    I+ V G  +PV   Y
Sbjct: 464 ---AKQLSQYFFSCGILLVNGRNFPVEIVY 490


>AT1G26370.1 | Symbols:  | RNA helicase family protein |
           chr1:9122030-9125368 REVERSE LENGTH=717
          Length = 717

 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 81/199 (40%), Gaps = 56/199 (28%)

Query: 2   WCKGEVCKIVCTQPRHISAISVSERISCERGESIGHNVGYKIPLECRGGRQSSIILCTTE 61
           +C+ E   I  TQPR I+A++V++R++ E    +G  VGY I  +      + +   T  
Sbjct: 83  FCR-EGKMIGITQPRRIAAVTVAKRVAEECEVQLGQKVGYSIRFDDTTSGSTRLKYMTDG 141

Query: 62  VLLKVLVSKGSCWLRTRSAKDDLSSITHIIMDEIHERDRYSDLLLAILR--QMLPSNP-- 117
           +L           LR       LS  + II+DE H+R  ++D+LLA+L+  Q   S P  
Sbjct: 142 LL-----------LREALLDPHLSRYSVIIVDEAHDRSVHTDVLLALLKKIQRTRSQPVS 190

Query: 118 -------------------------------------HLHLILMGASLDXXXXXRFSRYF 140
                                                 L LI+M ASLD      FS YF
Sbjct: 191 EKTEFGNVASQVQTTTRDANGPQQNGVLKGYQGRKLSPLKLIIMSASLDARV---FSEYF 247

Query: 141 GEFPIIHVPGLTYPVRSYY 159
           G    +HV G  +PV   Y
Sbjct: 248 GGAKAVHVQGRQFPVDILY 266