Miyakogusa Predicted Gene

Lj0g3v0278039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0278039.1 Non Chatacterized Hit- tr|I1M2W2|I1M2W2_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,73.83,0,DUF92,Protein
of unknown function DUF92, TMEM19; seg,NULL; FAMILY NOT NAMED,Protein
of unknown funct,CUFF.18474.1
         (322 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78620.1 | Symbols:  | Protein of unknown function DUF92, tra...   382   e-106
AT1G78620.2 | Symbols:  | Protein of unknown function DUF92, tra...   375   e-104

>AT1G78620.1 | Symbols:  | Protein of unknown function DUF92,
           transmembrane | chr1:29573862-29575758 REVERSE
           LENGTH=333
          Length = 333

 Score =  382 bits (982), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/259 (72%), Positives = 221/259 (85%)

Query: 57  SFQDAVGGAMALLQATPATWQSSVLSNLFIFLVGSPLLVTGLSLSGIAAAFLLGTLTWRA 116
           S +  +  AM L+Q+   TW+S+V +NL IF++GSPLLVTGLS SGIAAAFLLGTLTWRA
Sbjct: 67  SMEGVMTEAMKLIQSASPTWKSAVANNLLIFVLGSPLLVTGLSASGIAAAFLLGTLTWRA 126

Query: 117 FGPSGFFLVATYFVIGTAVTKVKMAQKMAQGIAEKRKGRRGPGSVIGSSAAGCVFAFLSI 176
           +G +GF LVA YFVIGTA TKVKM QK AQG+AEKRKGRRGP SVIGSSAAGCV AFLSI
Sbjct: 127 YGSAGFLLVAAYFVIGTAATKVKMTQKEAQGVAEKRKGRRGPRSVIGSSAAGCVCAFLSI 186

Query: 177 YGVGGEAYFRLWRLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVE 236
           Y VGG A+ +L+RLGFV+SFCTK+SDTVSSEIGKAYGKTTYL TTFK+VPRGTEGA+S+E
Sbjct: 187 YQVGGAAFSQLFRLGFVSSFCTKVSDTVSSEIGKAYGKTTYLATTFKIVPRGTEGAMSLE 246

Query: 237 GTLSGVLASIVLASVSCLIGQVGLHEAIICVLASQIANHGESIISAALQEKERFQWLNND 296
           GTL+G+LAS  LASV C +GQ+   EA +CVLASQIAN GESII A+ Q+KE F+WLNND
Sbjct: 247 GTLAGLLASFFLASVGCFLGQITPPEAAVCVLASQIANLGESIIGASFQDKEGFKWLNND 306

Query: 297 AVNIINVSMGSITAVLLQQ 315
            VN+IN+S+GSI A+L+QQ
Sbjct: 307 VVNVINISLGSIVAILMQQ 325


>AT1G78620.2 | Symbols:  | Protein of unknown function DUF92,
           transmembrane | chr1:29573862-29575758 REVERSE
           LENGTH=342
          Length = 342

 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/268 (70%), Positives = 221/268 (82%), Gaps = 9/268 (3%)

Query: 57  SFQDAVGGAMALLQATPATWQSSVLSNLFIFLVGSPLLVTGLSLSGIAAAFLLGTLTWRA 116
           S +  +  AM L+Q+   TW+S+V +NL IF++GSPLLVTGLS SGIAAAFLLGTLTWRA
Sbjct: 67  SMEGVMTEAMKLIQSASPTWKSAVANNLLIFVLGSPLLVTGLSASGIAAAFLLGTLTWRA 126

Query: 117 FGPSGFFLVATYFVI---------GTAVTKVKMAQKMAQGIAEKRKGRRGPGSVIGSSAA 167
           +G +GF LVA YFVI         GTA TKVKM QK AQG+AEKRKGRRGP SVIGSSAA
Sbjct: 127 YGSAGFLLVAAYFVIVSAFVINLNGTAATKVKMTQKEAQGVAEKRKGRRGPRSVIGSSAA 186

Query: 168 GCVFAFLSIYGVGGEAYFRLWRLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPR 227
           GCV AFLSIY VGG A+ +L+RLGFV+SFCTK+SDTVSSEIGKAYGKTTYL TTFK+VPR
Sbjct: 187 GCVCAFLSIYQVGGAAFSQLFRLGFVSSFCTKVSDTVSSEIGKAYGKTTYLATTFKIVPR 246

Query: 228 GTEGAVSVEGTLSGVLASIVLASVSCLIGQVGLHEAIICVLASQIANHGESIISAALQEK 287
           GTEGA+S+EGTL+G+LAS  LASV C +GQ+   EA +CVLASQIAN GESII A+ Q+K
Sbjct: 247 GTEGAMSLEGTLAGLLASFFLASVGCFLGQITPPEAAVCVLASQIANLGESIIGASFQDK 306

Query: 288 ERFQWLNNDAVNIINVSMGSITAVLLQQ 315
           E F+WLNND VN+IN+S+GSI A+L+QQ
Sbjct: 307 EGFKWLNNDVVNVINISLGSIVAILMQQ 334