Miyakogusa Predicted Gene

Lj0g3v0277959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0277959.1 tr|G7JPK5|G7JPK5_MEDTR Nucleoporin NUP188-like
protein OS=Medicago truncatula GN=MTR_4g075330 PE=4
S,73.45,0,seg,NULL,CUFF.18470.1
         (1343 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38760.1 | Symbols:  | Protein of unknown function (DUF3414) ...  1095   0.0  

>AT4G38760.1 | Symbols:  | Protein of unknown function (DUF3414) |
            chr4:18085033-18096166 REVERSE LENGTH=1965
          Length = 1965

 Score = 1095 bits (2833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1368 (44%), Positives = 862/1368 (63%), Gaps = 58/1368 (4%)

Query: 16   VNEQDKKNVWIVEIICNLVKNLPLNSYGAALMSMSVKILWIMMTCCPSSVSAATLNANLF 75
            VN + + +V +V+IICN V++L  +S GAA+M+M++ IL  ++ C PSSV+   L +N+F
Sbjct: 610  VNGKMESDVRVVDIICNSVRSLTFDSGGAAVMAMAIDILAKLLRCSPSSVAPMVLKSNIF 669

Query: 76   DITLQTSVFSAG--------TSNFSRLARMLLIDCEQNSNDFPLAISVLDFTIQLVETGI 127
            D+T  + V  +G         S   +LA+M+LIDCE+N    PL ISVL+FT+QLVE G+
Sbjct: 670  DMTSCSDVPDSGYNISLSGSWSLSGKLAKMILIDCEKNDTSCPLVISVLEFTMQLVEGGL 729

Query: 128  ENDALLALIIFSFQYVLVNHEYWKYKVKHIRWKITLKVLELVKKCIISRPYNGKLGEIVH 187
            END + AL++FS QY+L +HEYWKY   ++RWK+TLKV+EL+K C+    ++ KL +++ 
Sbjct: 730  ENDVVFALVVFSLQYILASHEYWKYNHGNMRWKVTLKVIELMKTCLRFSKFSTKLRDVLL 789

Query: 188  NVLFCDSSIHNMLFQTACTTAHALEKLHISRLFDPLEIEGLQLAIGSVLDILSVMLTNLS 247
            ++L  D+S+H+ LF+  CTT   LE L  SR  +P EIEG QLAI SVLD+L+V+L+  S
Sbjct: 790  DILLNDASVHSALFRIICTTTQNLENLCSSRFIEPAEIEGWQLAIVSVLDVLNVILSQFS 849

Query: 248  KDTLSSIPVFLQAVFSCATKPVPLITSVISLISYFRDPAIQFGAVRFISTLFAITDCVQP 307
            + T S +PVF QA+ S  TKP+ ++ ++ SLISYFR+P IQ  A + +S LFA+ +  Q 
Sbjct: 850  ESTHSGLPVFHQAMLSSTTKPISVVAAITSLISYFRNPTIQVCAAQVLSKLFALAESSQL 909

Query: 308  LSYGTSFFAPDNQEIIYLRHSVSCILLEQPESNEDLFVATVNLLTSAAYYQPSFIVAIMA 367
                 + F  DN++I  LR+SV+ I+L+    NE L VAT+ LLT AA +QP+ +VAI  
Sbjct: 910  YIISNAGFGLDNKQITDLRNSVTQIVLDLSGQNEHLVVATLKLLTVAARFQPALLVAIFD 969

Query: 368  LEENSEDHSNTSDARLQKNETFVVPLVSKISSLVDALMHYIERADDLINSKPCILLCILN 427
             +E+    S++S+ +  + +   +P  +  S L+  ++ Y+ERA D ++    ILL +L+
Sbjct: 970  SDED----SDSSNVKQSRKDASSIPDWACKSRLLHTILQYVERATDFVDRHTDILLGLLD 1025

Query: 428  FMFALWQGASQYANFLEFLRTREKLWEHLANAILNSASCETPLLESLKEKDALNLAYTFR 487
            F+  LWQ A QYAN LE  +  +KLW+  ++ I  ++  +   + SL +++   L   ++
Sbjct: 1026 FLKTLWQEAGQYANMLEPFKASKKLWQEFSDIISQASKIKDSTVGSLGKEEISKLLVKYQ 1085

Query: 488  CQSAILGIMAYELFFQKKLLHAESLVKNTAESKDKEQNATKTQKSKATDVPDLKRIWSSW 547
            CQ+++L IMA  +F  KKLL AESL K   E+K    N     K   T   D K I+S W
Sbjct: 1086 CQASVLEIMACNMFLYKKLLFAESLKKPCVETKKTASNGVSPPKLTWTADSDPKDIFSKW 1145

Query: 548  FKEAFLEKLIKSYMC-EFNSDIYHGAKVATTLFSVHVMVKXXXXXXXXXXXXXXQKIHGI 606
               + L+ +I+S    +  S+I   AKVA  L  VH++VK              +KI  I
Sbjct: 1146 CDISVLDGIIQSVSSLDGESEINFQAKVAAVLLIVHLIVKLETSGAGALSMVLVEKIKLI 1205

Query: 607  LTKLSIQPAFSELLSQYSQRGYSEGKELKKLILNDLYYHLQGELEGRKIGIGPFKELSQY 666
               L  QPAFSELL+QYS+ GYS GKEL  +I +DLY HLQG+LEGR I  GPFKEL Q+
Sbjct: 1206 SETLCAQPAFSELLAQYSKLGYSGGKELMPMIFSDLYCHLQGKLEGRDIPTGPFKELFQF 1265

Query: 667  LLESNFLGTYQRQFNEDF-FAKNVYLFDLVQLRADLRLNMWDCSDWRTSKEIAETMLRFL 725
            L+E++F   Y+++ N+D   A    LFD  Q++ +L +++WD S+W+TSK  AE ML ++
Sbjct: 1266 LVETSFWEKYKQKTNKDVNMALGDCLFDTQQIQTELGIDIWDFSEWKTSKTTAEEMLNYM 1325

Query: 726  QDANSVMLFSSSKLSALKGLTAVLAVYHDDSLGMAATRER-MPDELMVTCIDITCQSFLA 784
            Q ANS++L S+S+LS L  L +VL +Y D+SL  +A  ER +P  + +  ID  C+ F  
Sbjct: 1326 QRANSMVLLSTSQLSVLHALISVLILYEDNSLEESAAAERKIPSRVTLLSIDKVCRKFCT 1385

Query: 785  TIETLSSVARVWEXXXXXXXXXXXK-------------------CA------TSGLKILS 819
            T+++L+S   +W+           +                   CA        GLKIL 
Sbjct: 1386 TVDSLAS---LWDAPKIVFDILTAQADLLSRLLKSAKKNLSLSVCALVLRNVGPGLKILG 1442

Query: 820  ELKLVPSEANLIMKQXXXXXXXXXQS----NSFSSHSGGATNESSSEDFSTVSNATLGLL 875
             L+     +N I+K+                S +S+S G  +   ++DF+ +S+AT+GLL
Sbjct: 1443 SLR----HSNAILKKTINLLLEVLLLVVGFGSDNSNSSGMGHMVLAKDFAEISDATIGLL 1498

Query: 876  PILCRCIATSEHCMLSLSVMDVILRVFLVPRTWLPVLQNHLQLQFVMLKLQDKKS--AAP 933
            P+LC  +   E+  L L+ +D+ILR FL P TW P++Q+ L+LQ V+L+LQDKKS  +  
Sbjct: 1499 PLLCNFMGNPEYLTLCLTTVDLILRNFLTPETWFPIIQSQLRLQHVILQLQDKKSTTSVS 1558

Query: 934  TIMKFFLTLARVREGADMLYCSGFLSSLRVLFAESDEAFLRIGSEN-PGSSSEKFETLQD 992
             I+KFFLT+A+V  GA ML  SGF S+LR L  E  +    + S+N  GS  EK E  Q 
Sbjct: 1559 AILKFFLTIAQVHGGAQMLLNSGFFSTLRALLMEFPDGMSTLVSDNEKGSLLEKTEKTQH 1618

Query: 993  IWGLGLAVVTAMVQSLGDSSSGTAIVDSMMPYFFSEKAHLIFDSLNAPDFPSDDHDKKRP 1052
            IWG+GLAVVTAMV SLG  S+G  IV+S++ YFF EK ++I   L APDFPSDD DK R 
Sbjct: 1619 IWGIGLAVVTAMVHSLGSVSAGADIVESVISYFFLEKGYMISYYLAAPDFPSDDRDKVRL 1678

Query: 1053 RAQRSCISFGNLKETEHTLMLMCELAKHWNSWNKAIKNVDRQLREKCIHLLAFFSRGTQR 1112
            R+QR+  S   L+ TEHTL+L+C LA HW SW K +K++D  LRE  IHLLAF S+G QR
Sbjct: 1679 RSQRTWTSLAYLRVTEHTLLLLCALASHWRSWVKIMKDMDSPLREMTIHLLAFISKGAQR 1738

Query: 1113 LSESSSRNAPLLCPPTVKGDFEIALKPSYINSRNGWFALSPLGCV--PKQKTPPFSTALS 1170
            L ES S  + LLCPP  K +F+   +PS+IN+++GWF+L+PL CV  PK      STAL 
Sbjct: 1739 LRESQSHISHLLCPPVAKEEFDSCKRPSFINTKHGWFSLAPLVCVGKPKITAVSISTAL- 1797

Query: 1171 IYDGQAAGSTDAVPKTCFSDTVAVQVYRITYLLLQFLCLQAEGASKRAEEVGFVDLAHFP 1230
            +  G       +VP++ FSD+VA+Q+YR+  LLL+FLCLQAEG   RAEEVG+VD+AHFP
Sbjct: 1798 VVRGDTTEHPGSVPQSQFSDSVAIQIYRVASLLLKFLCLQAEGVVTRAEEVGYVDIAHFP 1857

Query: 1231 ELPMPEILHGLQDQASVIVAELCQANKLRESP-ETQNVCKLLLQILEMALYLELCVLQIC 1289
            ELP PEILHGLQDQA+ IVAELC   K +E P E + +C +L+Q  EM+LYLELCV+Q+C
Sbjct: 1858 ELPEPEILHGLQDQATAIVAELCDNYKSKEIPDEVKKLCLMLIQTTEMSLYLELCVVQVC 1917

Query: 1290 GIRPVLGRVEDFSKGARSLFSALEGHAFLKAYRKSLKQMISCIYPGLL 1337
             I PV GRV++FSK  + L  A E H +L+    SLK++ + +YPG L
Sbjct: 1918 RIHPVFGRVDNFSKDLKKLVKAAEVHTYLEPSIDSLKKIAAFLYPGSL 1965