Miyakogusa Predicted Gene

Lj0g3v0277869.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0277869.2 Non Chatacterized Hit- tr|I1LXA9|I1LXA9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,80.21,0,EXONUCLEASE
FAMILY PROTEIN,NULL; EXONUCLEASE,NULL; no description,Exonuclease;
RNase_T,Exonuclease, ,CUFF.18460.2
         (443 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G25800.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   590   e-169
AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 | c...   120   2e-27
AT5G05540.2 | Symbols: SDN2 | small RNA degrading nuclease 2 | c...   120   3e-27
AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 | c...   119   3e-27
AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 | c...   112   5e-25
AT5G67240.2 | Symbols: SDN3 | small RNA degrading nuclease 3 | c...   100   1e-21
AT3G50090.1 | Symbols:  | Exonuclease family protein | chr3:1857...    82   6e-16
AT3G15080.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    78   1e-14

>AT5G25800.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:8979761-8982724
           REVERSE LENGTH=567
          Length = 567

 Score =  590 bits (1521), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 279/444 (62%), Positives = 365/444 (82%), Gaps = 4/444 (0%)

Query: 1   MQTIDALLTCKVKRKRDENCSIMTKATLTPQQEDGCVGTNSLSYMELTKDIPFPVTYYTL 60
           M+TID +LTCK ++K+    S+     ++  +    +G    S++ELTKDIPFPV+YYTL
Sbjct: 127 MRTIDTILTCKGRKKKTVTSSVEPPPLVSSPEACNLMGK---SFVELTKDIPFPVSYYTL 183

Query: 61  TEKDLEENGYSINKPGFLSTLPAPLGSPFHEMLAVDCEMCVTSEGFELTRVTLVDVKGQV 120
           ++K++E+NGY+  K     TLPAP GS   E++A+DCEMC+T EG ELTRVTLVD++GQV
Sbjct: 184 SQKEMEQNGYTFEKLELTPTLPAPSGSCPPEIVALDCEMCITKEGLELTRVTLVDIQGQV 243

Query: 121 LIDKLVKPTNAITDYNTRFSGITYEMLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDL 180
           L+DKLV PTN ITDYNTR+SGIT  M++GVTT+L+DIQEEFLKLV+KETILVGHSLENDL
Sbjct: 244 LLDKLVMPTNPITDYNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKETILVGHSLENDL 303

Query: 181 LALKISHDLVIDTAVLYKHPRGSSHKTALRFLAKRFLKREIQQSGNGHDSIEDARATLEL 240
           L+LKISH+LVIDTAVLYKHP G S+KT LR LAK+FL REIQ+S +GHDS EDA+A ++L
Sbjct: 304 LSLKISHNLVIDTAVLYKHPHGRSYKTKLRILAKKFLAREIQESESGHDSAEDAKAAMDL 363

Query: 241 ALLKIKNGPDFGSPPNFMRKKLLSILSESGKTSSLIDDISVVKRFASESSHAIPVTSDEE 300
           ALLKIK+GPDFGSPP  +RKKLL++L+ESGKT+S+ID+I++VKR+ASESS+AIPV+SD+E
Sbjct: 364 ALLKIKHGPDFGSPPEVIRKKLLAVLNESGKTTSIIDNINIVKRYASESSNAIPVSSDDE 423

Query: 301 ALAKTTKELKNEKVHFIWTQFSELYSYLKKQAEDSEKLHKRLAEMMALRTCEKGKGF-KY 359
           AL+K  KE+KN++  F+WTQFSEL ++ + +A+D +KL+ RLAEM++L TC K  G  K 
Sbjct: 424 ALSKAVKEVKNKRSQFVWTQFSELNAHFQSRADDPQKLNSRLAEMISLLTCNKKSGLKKS 483

Query: 360 NASSELKEILARMDARIRNLYMSLPTNAMVIICTGHGDTAVVRRVRRMLAEDSESNFSRE 419
           N S E KEIL +M+ R+++LY +LPTNAM I+CTGHGDT++V RVR+ML ++ E  F RE
Sbjct: 484 NVSPETKEILKKMNERVQSLYAALPTNAMFIVCTGHGDTSIVHRVRKMLKDEDEIGFDRE 543

Query: 420 KIVELLEEFQARAEVALCFVGVKH 443
           K+V++LEE QA+AEVALCFVG+K 
Sbjct: 544 KLVKVLEELQAQAEVALCFVGIKQ 567


>AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 |
           chr3:18578411-18580594 FORWARD LENGTH=409
          Length = 409

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 99/167 (59%), Gaps = 2/167 (1%)

Query: 92  MLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDGV 150
           M+AVDCEM +  +G E L RV +VD   +V++D+ VKP   + DY T  +GIT E ++  
Sbjct: 140 MVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAEDIENA 199

Query: 151 TTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSS-HKTAL 209
           + S+ DIQE     +   TILVGHSL  DL  LKI H  VIDTA+++K+P      + +L
Sbjct: 200 SLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTRKLRRPSL 259

Query: 210 RFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSPPN 256
             L K  L  E++++G  HD + DA A ++LAL  ++   D    P+
Sbjct: 260 NNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVVEKRVDTTIKPS 306


>AT5G05540.2 | Symbols: SDN2 | small RNA degrading nuclease 2 |
           chr5:1636419-1638256 FORWARD LENGTH=352
          Length = 352

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 102/171 (59%), Gaps = 7/171 (4%)

Query: 91  EMLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDG 149
           EM+A+DCEM +  +G E + RV  VD   +V++D+ VKP   + DY T  +G+T + L+ 
Sbjct: 141 EMIAIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEK 200

Query: 150 VTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSH---- 205
            T S+ DIQE+ L  + ++TILVG SL +DL  LK+ H  VIDT++++K+    +     
Sbjct: 201 ATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLR 260

Query: 206 --KTALRFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSP 254
             + +L +L K  L  E+Q+ G  H+ + DA A ++L L  + NG +   P
Sbjct: 261 LKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNGAETSVP 311


>AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 |
           chr5:1636419-1638759 FORWARD LENGTH=466
          Length = 466

 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 102/171 (59%), Gaps = 7/171 (4%)

Query: 91  EMLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDG 149
           EM+A+DCEM +  +G E + RV  VD   +V++D+ VKP   + DY T  +G+T + L+ 
Sbjct: 141 EMIAIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEK 200

Query: 150 VTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSH---- 205
            T S+ DIQE+ L  + ++TILVG SL +DL  LK+ H  VIDT++++K+    +     
Sbjct: 201 ATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLR 260

Query: 206 --KTALRFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSP 254
             + +L +L K  L  E+Q+ G  H+ + DA A ++L L  + NG +   P
Sbjct: 261 LKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNGAETSVP 311


>AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 |
           chr5:26824454-26828098 REVERSE LENGTH=782
          Length = 782

 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 95/161 (59%), Gaps = 6/161 (3%)

Query: 92  MLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDGV 150
           ML++DCEM    +G + L RV  VD   +V++DK VKP   + DY T  +G+T E L+  
Sbjct: 145 MLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDLERA 204

Query: 151 TTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKH---PRGSSHKT 207
           T S+ DIQ++  + +   TILVGH L NDL  L+I H  VIDT+ +++    P+  + + 
Sbjct: 205 TLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSYVFEFVDAPK--TQRP 262

Query: 208 ALRFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNG 248
           +L  L K  L +E++  G  H+ + DA A ++L L  ++ G
Sbjct: 263 SLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAVEKG 303


>AT5G67240.2 | Symbols: SDN3 | small RNA degrading nuclease 3 |
           chr5:26824454-26828098 REVERSE LENGTH=762
          Length = 762

 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 20/158 (12%)

Query: 92  MLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDGV 150
           ML++DCEM    +G + L RV  VD   +V++DK VKP   + DY T  +G+T E L+  
Sbjct: 145 MLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDLERA 204

Query: 151 TTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKTALR 210
           T S+ DIQ++  + +   TILVGH L NDL  L+I H  VIDT+                
Sbjct: 205 TLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSY--------------- 249

Query: 211 FLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNG 248
                 L +E++  G  H+ + DA A ++L L  ++ G
Sbjct: 250 ----SVLGQEVRMDGAAHNCVHDAAAAMKLVLAAVEKG 283


>AT3G50090.1 | Symbols:  | Exonuclease family protein |
           chr3:18575432-18577336 FORWARD LENGTH=322
          Length = 322

 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 15/146 (10%)

Query: 90  HEMLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLD 148
           ++MLA+DCEM +  +G E + RV  VD   +V++D+ VKP   + DY T  +G+T E + 
Sbjct: 73  NQMLALDCEMVLCEDGTEGVVRVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAEDVQ 132

Query: 149 GVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSS-HKT 207
             T SL DIQE+    +    IL             I H +VIDT++++K+P      + 
Sbjct: 133 KATLSLVDIQEKLRPFLSAGAIL-------------IDHPIVIDTSLVFKYPNSRKLRRP 179

Query: 208 ALRFLAKRFLKREIQQSGNGHDSIED 233
           +L  L    L  E+Q++G  H  + D
Sbjct: 180 SLNTLCMSVLGYEVQKAGVSHHCVHD 205


>AT3G15080.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:5074319-5076327
           FORWARD LENGTH=275
          Length = 275

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 11/174 (6%)

Query: 72  INKPGFLSTLPAPLGSPFHEMLAVDCEMCVTSEGFE--LTRVTLVDVKGQVLIDKLVKPT 129
           ++ P      P    S   + +A+DCEM   S+G +  L RVTLV+  G VL D+ V+P 
Sbjct: 63  VDVPKINPLAPVNDDSSLTDEVAMDCEMVGVSQGTKSALGRVTLVNKWGNVLYDEFVRPV 122

Query: 130 NAITDYNTRFSGITYEMLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDL 189
             + D+ T  SGI    L       R  Q +  +L+ K  ILVGH+L NDL AL ++H  
Sbjct: 123 EHVVDFRTSISGIRPRDLRKA-KDFRVAQTKVAELI-KGKILVGHALHNDLKALLLTHPK 180

Query: 190 --VIDTAVLYKHPRGSSHKTALRFLAKRFLKREIQQSGNG-HDSIEDARATLEL 240
             + DT       +G + K+ L+ LA   L  +IQ   NG H  I+DARA + L
Sbjct: 181 KDIRDTGEYQPFLKGKTRKS-LKHLASEILGADIQ---NGEHCPIDDARAAMML 230