Miyakogusa Predicted Gene
- Lj0g3v0277869.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0277869.1 Non Chatacterized Hit- tr|I1LXA9|I1LXA9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,76.79,0,EXONUCLEASE
FAMILY PROTEIN,NULL; EXONUCLEASE,NULL; no description,Exonuclease;
RNase_T,Exonuclease, ,CUFF.18460.1
(595 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G25800.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 726 0.0
AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 | c... 120 4e-27
AT5G05540.2 | Symbols: SDN2 | small RNA degrading nuclease 2 | c... 119 4e-27
AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 | c... 119 5e-27
AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 | c... 112 1e-24
AT5G67240.2 | Symbols: SDN3 | small RNA degrading nuclease 3 | c... 101 2e-21
AT3G50090.1 | Symbols: | Exonuclease family protein | chr3:1857... 82 8e-16
AT3G15080.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 79 1e-14
>AT5G25800.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr5:8979761-8982724
REVERSE LENGTH=567
Length = 567
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/599 (59%), Positives = 460/599 (76%), Gaps = 36/599 (6%)
Query: 1 MDSSEANTESPSRAEQ-DSTANKKCT--KFYDIYGPEGKADVVFKSPEDNSTLNLNDIQG 57
M SS+ + + AE D +K T F+DIYGPE KA++ FKSPE +TLNL D+QG
Sbjct: 1 MSSSKRKRGAETAAEDCDDGTDKSNTGNSFFDIYGPEAKAELDFKSPE--TTLNLQDVQG 58
Query: 58 LITWVLGEGFMPSWVFIKNKPLIPKVMMLYMPGLDAALFLSQSKMLPSLKKFCGKPRPVL 117
L+TWVL EGFMPSWVFIKNKPLIPKV++LY+PGLDAAL+LS SK L SLK CG P +L
Sbjct: 59 LVTWVLAEGFMPSWVFIKNKPLIPKVVLLYLPGLDAALYLSHSKTLSSLKSCCGNPMALL 118
Query: 118 ALRSVEENVFTSNILQNVVPIDLFFLILASCVSDGMQTIDALLTCKVKRKRDENCSIMTK 177
AL SCV D M+TID +LTCK ++K+ S+
Sbjct: 119 AL---------------------------SCVVDEMRTIDTILTCKGRKKKTVTSSVEPP 151
Query: 178 ATLTPQQEDGCVGTNSLSYMELTKDIPFPVTYYTLTEKDLEENGYSINKPGFLSTLPAPL 237
++ + +G S++ELTKDIPFPV+YYTL++K++E+NGY+ K TLPAP
Sbjct: 152 PLVSSPEACNLMGK---SFVELTKDIPFPVSYYTLSQKEMEQNGYTFEKLELTPTLPAPS 208
Query: 238 GSPFHEMLAVDCEMCVTSEGFELTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYE 297
GS E++A+DCEMC+T EG ELTRVTLVD++GQVL+DKLV PTN ITDYNTR+SGIT
Sbjct: 209 GSCPPEIVALDCEMCITKEGLELTRVTLVDIQGQVLLDKLVMPTNPITDYNTRYSGITAV 268
Query: 298 MLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSH 357
M++GVTT+L+DIQEEFLKLV+KETILVGHSLENDLL+LKISH+LVIDTAVLYKHP G S+
Sbjct: 269 MMEGVTTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISHNLVIDTAVLYKHPHGRSY 328
Query: 358 KTALRFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSPPNFMRKKLLSI 417
KT LR LAK+FL REIQ+S +GHDS EDA+A ++LALLKIK+GPDFGSPP +RKKLL++
Sbjct: 329 KTKLRILAKKFLAREIQESESGHDSAEDAKAAMDLALLKIKHGPDFGSPPEVIRKKLLAV 388
Query: 418 LSESGKTSSLIDDISVVKRFASESSHAIPVTSDEEALAKTTKELKNEKVHFIWTQFSELY 477
L+ESGKT+S+ID+I++VKR+ASESS+AIPV+SD+EAL+K KE+KN++ F+WTQFSEL
Sbjct: 389 LNESGKTTSIIDNINIVKRYASESSNAIPVSSDDEALSKAVKEVKNKRSQFVWTQFSELN 448
Query: 478 SYLKKQAEDSEKLHKRLAEMMALRTCEKGKGF-KYNASSELKEILARMDARIRNLYMSLP 536
++ + +A+D +KL+ RLAEM++L TC K G K N S E KEIL +M+ R+++LY +LP
Sbjct: 449 AHFQSRADDPQKLNSRLAEMISLLTCNKKSGLKKSNVSPETKEILKKMNERVQSLYAALP 508
Query: 537 TNAMVIICTGHGDTAVVRRVRRMLAEDSESNFSREKIVELLEEFQARAEVALCFVGVKH 595
TNAM I+CTGHGDT++V RVR+ML ++ E F REK+V++LEE QA+AEVALCFVG+K
Sbjct: 509 TNAMFIVCTGHGDTSIVHRVRKMLKDEDEIGFDREKLVKVLEELQAQAEVALCFVGIKQ 567
>AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 |
chr3:18578411-18580594 FORWARD LENGTH=409
Length = 409
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 99/167 (59%), Gaps = 2/167 (1%)
Query: 244 MLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDGV 302
M+AVDCEM + +G E L RV +VD +V++D+ VKP + DY T +GIT E ++
Sbjct: 140 MVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAEDIENA 199
Query: 303 TTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSS-HKTAL 361
+ S+ DIQE + TILVGHSL DL LKI H VIDTA+++K+P + +L
Sbjct: 200 SLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTRKLRRPSL 259
Query: 362 RFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSPPN 408
L K L E++++G HD + DA A ++LAL ++ D P+
Sbjct: 260 NNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVVEKRVDTTIKPS 306
>AT5G05540.2 | Symbols: SDN2 | small RNA degrading nuclease 2 |
chr5:1636419-1638256 FORWARD LENGTH=352
Length = 352
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 102/171 (59%), Gaps = 7/171 (4%)
Query: 243 EMLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDG 301
EM+A+DCEM + +G E + RV VD +V++D+ VKP + DY T +G+T + L+
Sbjct: 141 EMIAIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEK 200
Query: 302 VTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSH---- 357
T S+ DIQE+ L + ++TILVG SL +DL LK+ H VIDT++++K+ +
Sbjct: 201 ATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLR 260
Query: 358 --KTALRFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSP 406
+ +L +L K L E+Q+ G H+ + DA A ++L L + NG + P
Sbjct: 261 LKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNGAETSVP 311
>AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 |
chr5:1636419-1638759 FORWARD LENGTH=466
Length = 466
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 102/171 (59%), Gaps = 7/171 (4%)
Query: 243 EMLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDG 301
EM+A+DCEM + +G E + RV VD +V++D+ VKP + DY T +G+T + L+
Sbjct: 141 EMIAIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEK 200
Query: 302 VTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSH---- 357
T S+ DIQE+ L + ++TILVG SL +DL LK+ H VIDT++++K+ +
Sbjct: 201 ATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLR 260
Query: 358 --KTALRFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSP 406
+ +L +L K L E+Q+ G H+ + DA A ++L L + NG + P
Sbjct: 261 LKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNGAETSVP 311
>AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 |
chr5:26824454-26828098 REVERSE LENGTH=782
Length = 782
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
Query: 244 MLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDGV 302
ML++DCEM +G + L RV VD +V++DK VKP + DY T +G+T E L+
Sbjct: 145 MLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDLERA 204
Query: 303 TTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRG-SSHKTAL 361
T S+ DIQ++ + + TILVGH L NDL L+I H VIDT+ +++ + + +L
Sbjct: 205 TLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSYVFEFVDAPKTQRPSL 264
Query: 362 RFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNG 400
L K L +E++ G H+ + DA A ++L L ++ G
Sbjct: 265 NNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAVEKG 303
>AT5G67240.2 | Symbols: SDN3 | small RNA degrading nuclease 3 |
chr5:26824454-26828098 REVERSE LENGTH=762
Length = 762
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 20/158 (12%)
Query: 244 MLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDGV 302
ML++DCEM +G + L RV VD +V++DK VKP + DY T +G+T E L+
Sbjct: 145 MLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDLERA 204
Query: 303 TTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKTALR 362
T S+ DIQ++ + + TILVGH L NDL L+I H VIDT+
Sbjct: 205 TLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSY--------------- 249
Query: 363 FLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNG 400
L +E++ G H+ + DA A ++L L ++ G
Sbjct: 250 ----SVLGQEVRMDGAAHNCVHDAAAAMKLVLAAVEKG 283
>AT3G50090.1 | Symbols: | Exonuclease family protein |
chr3:18575432-18577336 FORWARD LENGTH=322
Length = 322
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 17/168 (10%)
Query: 222 YSINKPGFLSTLPAPLGSPF--HEMLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLV 278
+S +K F+S + + + ++MLA+DCEM + +G E + RV VD +V++D+ V
Sbjct: 51 HSYSKDWFVSDVGMKMSNVMIPNQMLALDCEMVLCEDGTEGVVRVGAVDRNLKVILDEFV 110
Query: 279 KPTNAITDYNTRFSGITYEMLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKIS 338
KP + DY T +G+T E + T SL DIQE+ + IL I
Sbjct: 111 KPHKPVVDYRTAITGVTAEDVQKATLSLVDIQEKLRPFLSAGAIL-------------ID 157
Query: 339 HDLVIDTAVLYKHPRGSS-HKTALRFLAKRFLKREIQQSGNGHDSIED 385
H +VIDT++++K+P + +L L L E+Q++G H + D
Sbjct: 158 HPIVIDTSLVFKYPNSRKLRRPSLNTLCMSVLGYEVQKAGVSHHCVHD 205
>AT3G15080.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:5074319-5076327
FORWARD LENGTH=275
Length = 275
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 11/174 (6%)
Query: 224 INKPGFLSTLPAPLGSPFHEMLAVDCEMCVTSEGFE--LTRVTLVDVKGQVLIDKLVKPT 281
++ P P S + +A+DCEM S+G + L RVTLV+ G VL D+ V+P
Sbjct: 63 VDVPKINPLAPVNDDSSLTDEVAMDCEMVGVSQGTKSALGRVTLVNKWGNVLYDEFVRPV 122
Query: 282 NAITDYNTRFSGITYEMLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDL 341
+ D+ T SGI L R Q + +L+ K ILVGH+L NDL AL ++H
Sbjct: 123 EHVVDFRTSISGIRPRDLRKA-KDFRVAQTKVAELI-KGKILVGHALHNDLKALLLTHPK 180
Query: 342 --VIDTAVLYKHPRGSSHKTALRFLAKRFLKREIQQSGNG-HDSIEDARATLEL 392
+ DT +G + K+ L+ LA L +IQ NG H I+DARA + L
Sbjct: 181 KDIRDTGEYQPFLKGKTRKS-LKHLASEILGADIQ---NGEHCPIDDARAAMML 230