Miyakogusa Predicted Gene
- Lj0g3v0277309.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0277309.1 Non Chatacterized Hit- tr|D8S279|D8S279_SELML
Putative uncharacterized protein SmMTP12 (Fragment)
OS,26.53,0.00000000000004,Multidrug resistance efflux transporter
EmrE,NULL; EamA,Drug/metabolite transporter,CUFF.18405.1
(358 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G38380.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 533 e-152
AT5G38380.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 378 e-105
AT2G04620.1 | Symbols: | Cation efflux family protein | chr2:16... 66 4e-11
>AT5G38380.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF6, transmembrane
(InterPro:IPR000620); BEST Arabidopsis thaliana protein
match is: Cation efflux family protein
(TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins
in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69;
Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes -
9 (source: NCBI BLink). | chr5:15345660-15348217 FORWARD
LENGTH=361
Length = 361
Score = 533 bits (1374), Expect = e-152, Method: Compositional matrix adjust.
Identities = 253/357 (70%), Positives = 298/357 (83%), Gaps = 12/357 (3%)
Query: 1 MMSPNHLSEDRGGPSHHHFRHTPFQIIHTAANFMRIWSIYSMYRYLYQTGASVVLFLFAC 60
MMSP +S+DRG HFRHTPFQIIH NF RIWS+YSMYRYL QTGA VVLFLF C
Sbjct: 1 MMSPKQISDDRGS---SHFRHTPFQIIHLIGNFFRIWSVYSMYRYLNQTGAPVVLFLFCC 57
Query: 61 LAPTAIIFLVLQKPWKGRPLSNTQIVPSIINGFITALYLVLWGKGLKSCGPVRALLAEYS 120
L P++IIFL++QKPWKGR LSN QIVPS+ING ITALY +LWGKGLKSCGP+RA+L+EYS
Sbjct: 58 LVPSSIIFLIIQKPWKGRALSNQQIVPSLINGVITALYFILWGKGLKSCGPLRAILSEYS 117
Query: 121 GAVLGVLSAVLYGRRSHLLKKIGGLIAMLASLYLLSEGWAMATYSPFSWEDRDDS---EV 177
GAVLGVLS VLYGRR H+ KK+GGLIAML +L+ LS+GWA ++ SPFS +D ++ EV
Sbjct: 118 GAVLGVLSGVLYGRRGHVWKKVGGLIAMLVALFFLSQGWATSSLSPFSTKDSTETKEEEV 177
Query: 178 QTEQILGLKQMFVPIFAGILSALRRVIARRVSIKNQLKKRLHALTIASATCFMFPIAMWD 237
QTEQ LG+ M +P+FAGILSALRRVIARRVS+KNQ KKRLHA+TI SATCF+FP+AMWD
Sbjct: 178 QTEQALGMMGMMIPVFAGILSALRRVIARRVSLKNQQKKRLHAITITSATCFLFPVAMWD 237
Query: 238 IIIGSPSDSNGKLPFSAWAFFSTILFGNILIFYVDSIAEERLHMVFSSPRHLMVASACII 297
+IIGS S +LPFSAWAF STI+FG ILIFYVD+IAEERLHMVFSSPRHLMVA CII
Sbjct: 238 LIIGSSSGKTSELPFSAWAFLSTIIFGIILIFYVDNIAEERLHMVFSSPRHLMVAGVCII 297
Query: 298 IMEIVYKMDFSLTGFVICCLILGFGIYQATSLERNRKDSTRNSD------LSNGEFD 348
+ME+ Y+MDFSL GF++CCL+LGFGI++ATSLERN+KDS+ S+ L N +FD
Sbjct: 298 VMELAYEMDFSLPGFIVCCLVLGFGIFEATSLERNKKDSSLKSEDPSNGILGNNDFD 354
>AT5G38380.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: membrane;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF6, transmembrane
(InterPro:IPR000620); Has 109 Blast hits to 107 proteins
in 35 species: Archae - 0; Bacteria - 0; Metazoa - 59;
Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes -
7 (source: NCBI BLink). | chr5:15345660-15347920 FORWARD
LENGTH=267
Length = 267
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/280 (66%), Positives = 216/280 (77%), Gaps = 25/280 (8%)
Query: 1 MMSPNHLSEDRGGPSHHHFRHTPFQIIHTAANFMRIWSIYSMYRYLYQTGASVVLFLFAC 60
MMSP +S+DRG HFRHTPFQIIH NF RIWS+YSMYRYL QTGA VVLFLF C
Sbjct: 1 MMSPKQISDDRGS---SHFRHTPFQIIHLIGNFFRIWSVYSMYRYLNQTGAPVVLFLFCC 57
Query: 61 LAPTAIIFLVLQKPWKGRPLSNTQIVPSIINGFITALYLVLWGKGLKSCGPVRALLAEYS 120
L P++IIFL++QKPWKGR LSN QIVPS+ING ITALY +LWGKGLKSCGP+RA+L+EYS
Sbjct: 58 LVPSSIIFLIIQKPWKGRALSNQQIVPSLINGVITALYFILWGKGLKSCGPLRAILSEYS 117
Query: 121 GAVLGVLSAVLYGRRSHLLKKIGGLIAMLASLYLLSEGWAMATYSPFSWEDRDDSEVQTE 180
GAVLGVLS VLYGRR H+ KK+ + S E +++ EVQTE
Sbjct: 118 GAVLGVLSGVLYGRRGHVWKKLP---------------------TKDSTETKEE-EVQTE 155
Query: 181 QILGLKQMFVPIFAGILSALRRVIARRVSIKNQLKKRLHALTIASATCFMFPIAMWDIII 240
Q LG+ M +P+FAGILSALRRVIARRVS+KNQ KKRLHA+TI SATCF+FP+AMWD+II
Sbjct: 156 QALGMMGMMIPVFAGILSALRRVIARRVSLKNQQKKRLHAITITSATCFLFPVAMWDLII 215
Query: 241 GSPSDSNGKLPFSAWAFFSTILFGNILIFYVDSIAEERLH 280
GS S +LPFSAWAF STI+FG ILIFYVD+IAEER
Sbjct: 216 GSSSGKTSELPFSAWAFLSTIIFGIILIFYVDNIAEERFR 255
>AT2G04620.1 | Symbols: | Cation efflux family protein |
chr2:1610506-1612902 REVERSE LENGTH=798
Length = 798
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 27/227 (11%)
Query: 91 NGFITALYLVLWGKGLKSCGPVRALLAEYSGAVLGVLSAVLY------GRRSHLLKKIGG 144
F+ A +L + L+ CG +LAE SG V + VL+ G RS K+ G
Sbjct: 146 KSFLLAFVFLLRFQALRYCGAAAMILAELSGTVS---ARVLFSDTGGIGVRS---SKVRG 199
Query: 145 LIAMLASLYLLSEGWAMATYSPFSWEDRDDSEVQT--------EQILGLKQMFVPIFAGI 196
+ A L LLS W PFS S V++ E L + + +P +G
Sbjct: 200 FCVLFAGLLLLSISWDRVDCFPFS------SSVESWGFWIYPKENCLRIWPLLLPFLSGF 253
Query: 197 LSALRRVIARRVSIKNQLKKRLHALTIASATCFMFPIAMWDIIIGSPSDSNGKLPFSAWA 256
L +V IK +KR+ L++ T +FP+A+W D + W
Sbjct: 254 LGCYEKVSVNWNEIKQLDQKRVRLLSLFLTTVLLFPLAIWSFFFSGSGDDSVSFGNLGWP 313
Query: 257 FFSTILFGNILIFYVDSIAEERLHMVFSSPRHLMVASACIIIMEIVY 303
+T++FG +L+ + + S R +V C I++E+ Y
Sbjct: 314 LANTVVFG-VLLSENYNDDKFSSSKKKDSEREFLVTFLCTIVLELFY 359