Miyakogusa Predicted Gene

Lj0g3v0276759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276759.1 tr|A9S0R2|A9S0R2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_162167,35.2,0.00000003,no description,NULL; SUBFAMILY
NOT NAMED,NULL; RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED,NULL;
L30e,CUFF.18364.1
         (183 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01790.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd4...   158   2e-39

>AT4G01790.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein | chr4:769868-770728 FORWARD LENGTH=167
          Length = 167

 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 112/158 (70%), Gaps = 12/158 (7%)

Query: 26  ENNSYEGERLTHLLQSIRRETELARRLDGCSLPEKIWLKQQFSIGVNDVTRVLERMEPCA 85
           E++ YEGERLTHLL  I+R  E ++  +  SLPEKIWLK+Q +IG+N+VTRVLERM P  
Sbjct: 22  ESDYYEGERLTHLLDLIQRGIETSKLSNVNSLPEKIWLKKQIAIGINEVTRVLERMNPNN 81

Query: 86  ELESSAELIPLIRSNHKAPSVKLQAVLVASDCNPRWLTKHLQSLASSRSVPLIFIRDNKE 145
                        S+ +    +LQ V++ +DC PR LTKH+ +LA+SR+VP++++RDNK 
Sbjct: 82  T------------SDQQQNPKQLQVVILVADCKPRMLTKHIPNLAASRNVPVLYVRDNKR 129

Query: 146 GSLRLGELVKLKTAVAIGIKVKGSVINKTVEDIIQADA 183
            SLRLGELVKLKTA+AIGIK +G+ +N  ++ I+  D+
Sbjct: 130 ASLRLGELVKLKTALAIGIKARGNDLNLLLKQILPRDS 167