Miyakogusa Predicted Gene

Lj0g3v0276439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276439.1 Non Chatacterized Hit- tr|H2W4K5|H2W4K5_CAEJA
Uncharacterized protein OS=Caenorhabditis japonica GN=,40.41,6e-19,no
description,Protein N-terminal glutamine amidohydrolase, alpha beta
roll; SUBFAMILY NOT NAMED,NUL,CUFF.18339.1
         (218 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41760.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   306   9e-84

>AT2G41760.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function WDYHV
           (InterPro:IPR019161); Has 201 Blast hits to 201 proteins
           in 90 species: Archae - 0; Bacteria - 2; Metazoa - 132;
           Fungi - 10; Plants - 30; Viruses - 0; Other Eukaryotes -
           27 (source: NCBI BLink). | chr2:17422864-17424255
           FORWARD LENGTH=221
          Length = 221

 Score =  306 bits (783), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 141/211 (66%), Positives = 172/211 (81%), Gaps = 2/211 (0%)

Query: 4   LTMDASHFHHTPFYCEENVYLLCKKLCDDGIANAEGSDLFVAFISNEKKQIPLWNQKAST 63
           + MDA+ F HTP+YCEENVYLLCK LC++G+A A  SDLFV FISNEKKQ+PLW+QKAST
Sbjct: 9   IAMDATRFQHTPYYCEENVYLLCKTLCENGVAEATCSDLFVVFISNEKKQVPLWHQKAST 68

Query: 64  RADGVILWDYHVICIQ-AIQGDSPPLVWDLDSTLPFPSPLASYVSETIRPSFQLFSEYNR 122
           RADGV+LWDYHVIC+Q   + DS PLVWDLDSTLPFPSPLASYV+ETI+PSFQLF+EY R
Sbjct: 69  RADGVVLWDYHVICVQRKKESDSEPLVWDLDSTLPFPSPLASYVTETIQPSFQLFAEYQR 128

Query: 123 LFRIVHAPMFLRCFASDRRHMKVSSGNWIEDPPPHEPIVAEDGTVHNLNEYISMSVSDVD 182
            FRIVHAP+F + FASDRRHMK   G+W   PPP+EPIVA+DG +HNL+EYI+MS +D  
Sbjct: 129 FFRIVHAPLFFKHFASDRRHMKEPDGSWTAQPPPYEPIVAQDGILHNLSEYIAMSGADTL 188

Query: 183 SNTKISSVKDATFTQKHGVVIKENQVEELFS 213
           S+    +V  A  +QK GVV+   Q+++LF+
Sbjct: 189 SSLDPETVT-AAISQKLGVVVSHTQLQDLFT 218