Miyakogusa Predicted Gene

Lj0g3v0276339.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276339.2 Non Chatacterized Hit- tr|J3NCI5|J3NCI5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB12G1,48.42,6e-18,RNase_P_p30,RNase P subunit p30; seg,NULL; PHP
domain-like,Polymerase/histidinol phosphatase-like; n,CUFF.18343.2
         (591 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59980.2 | Symbols:  | Polymerase/histidinol phosphatase-like...   162   7e-40
AT5G59980.1 | Symbols:  | Polymerase/histidinol phosphatase-like...   161   1e-39

>AT5G59980.2 | Symbols:  | Polymerase/histidinol phosphatase-like |
           chr5:24147207-24149783 FORWARD LENGTH=705
          Length = 705

 Score =  162 bits (410), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 80/150 (53%), Positives = 103/150 (68%), Gaps = 7/150 (4%)

Query: 1   MDWTRGQNLVFSSGAPSVNELRGPCDVANLLSLFGLSKEQAKAAISKNCRILLANSLRKK 60
           +DWTRG+NL+ SSGAPSV ELRGP DV NL+ L GLS E+A+AAISKNCR ++A  L+KK
Sbjct: 201 VDWTRGKNLIISSGAPSVTELRGPNDVINLMFLLGLSAERARAAISKNCRNMIAKVLKKK 260

Query: 61  RFFKEAIRVEALPTNAESHSNEAWHQELLKWDPISSGEGDILLDDMEKPCKA-------S 113
           RF KEA+RVE L         +   ++ +KWD +SSGEGD+LLDD+ K   A       S
Sbjct: 261 RFHKEAVRVELLSAGDTFSLEQPLSEDCMKWDRLSSGEGDMLLDDLAKAFDATNVVAHKS 320

Query: 114 CKAIDFDSLMAGLSSKGFRIQDSLSTNKVS 143
            KAIDF S++ GL   GFR++D + T  V+
Sbjct: 321 SKAIDFTSVLDGLPKHGFRVKDIVGTESVT 350


>AT5G59980.1 | Symbols:  | Polymerase/histidinol phosphatase-like |
           chr5:24147207-24149392 FORWARD LENGTH=581
          Length = 581

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/150 (53%), Positives = 103/150 (68%), Gaps = 7/150 (4%)

Query: 1   MDWTRGQNLVFSSGAPSVNELRGPCDVANLLSLFGLSKEQAKAAISKNCRILLANSLRKK 60
           +DWTRG+NL+ SSGAPSV ELRGP DV NL+ L GLS E+A+AAISKNCR ++A  L+KK
Sbjct: 201 VDWTRGKNLIISSGAPSVTELRGPNDVINLMFLLGLSAERARAAISKNCRNMIAKVLKKK 260

Query: 61  RFFKEAIRVEALPTNAESHSNEAWHQELLKWDPISSGEGDILLDDMEKPCKA-------S 113
           RF KEA+RVE L         +   ++ +KWD +SSGEGD+LLDD+ K   A       S
Sbjct: 261 RFHKEAVRVELLSAGDTFSLEQPLSEDCMKWDRLSSGEGDMLLDDLAKAFDATNVVAHKS 320

Query: 114 CKAIDFDSLMAGLSSKGFRIQDSLSTNKVS 143
            KAIDF S++ GL   GFR++D + T  V+
Sbjct: 321 SKAIDFTSVLDGLPKHGFRVKDIVGTESVT 350