Miyakogusa Predicted Gene
- Lj0g3v0276329.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0276329.2 tr|Q1PFY7|Q1PFY7_ARATH CCT motif-containing
protein OS=Arabidopsis thaliana GN=At1g04500 PE=2
SV=1,42.75,6e-19,seg,NULL; CCT,CCT domain,CUFF.18336.2
(248 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59990.1 | Symbols: | CCT motif family protein | chr5:241512... 79 3e-15
AT1G63820.1 | Symbols: | CCT motif family protein | chr1:236825... 77 2e-14
AT5G41380.1 | Symbols: | CCT motif family protein | chr5:165621... 74 1e-13
AT2G33350.1 | Symbols: | CCT motif family protein | chr2:141341... 65 4e-11
AT2G33350.2 | Symbols: | CCT motif family protein | chr2:141341... 65 4e-11
AT1G04500.1 | Symbols: | CCT motif family protein | chr1:122175... 61 7e-10
AT3G12890.1 | Symbols: ASML2 | activator of spomin::LUC2 | chr3:... 56 2e-08
>AT5G59990.1 | Symbols: | CCT motif family protein |
chr5:24151206-24153084 REVERSE LENGTH=241
Length = 241
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 58 LMQRSVSSHSLHTNTKSNNNGTCHHPFSAFFAELLDSDQDTPAVRRVYSAGDLQRINXXX 117
+MQRSVSSH+ + N T H F +D D P VRR SAGDL R
Sbjct: 92 VMQRSVSSHNGFSG-----NYTAAHDFV--------NDDDGP-VRRALSAGDLPR----- 132
Query: 118 XXXXXXXXXXXXXXXXXXMIIEGMNRVCRYSPEEKKMRIEXXXXXXXXXXXXXXXXYACR 177
IIEGM++ +YSPEEKK +IE Y CR
Sbjct: 133 ----SSRRESSTVWSESNAIIEGMSKAYKYSPEEKKEKIEKYRSKRNLRNFNKRIKYECR 188
Query: 178 KTLADSRPRVRGRFARNDETDQKPTVQWSHIGAAXXXXXXXXSWVSIFDSIVA 230
KTLADSRPR+RGRFARNDE Q+ V +W S DS A
Sbjct: 189 KTLADSRPRIRGRFARNDEISQQEQVD-----VMEAVVGDVDTWASFLDSFSA 236
>AT1G63820.1 | Symbols: | CCT motif family protein |
chr1:23682529-23684050 REVERSE LENGTH=293
Length = 293
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 83 PFSAFFAE---------LLDSDQDT---PAVRRVYSAGDLQRINXXXXXXXXXXXXXXXX 130
PF A F E LL+S +D+ +RRVYS GDLQ +
Sbjct: 109 PFDAPFMEDSSNFQNQNLLNSPEDSFFSDHMRRVYSTGDLQNLGRDFTGQRSYSSPLAAE 168
Query: 131 XXXXXMII--EGMNRVCRYSPEEKKMRIEXXXXXXXXXXXXXXXXYACRKTLADSRPRVR 188
+ E RV RYS EE+K +I YACRKTLAD+RPRVR
Sbjct: 169 SSPTTVFSGDEQSLRVGRYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVR 228
Query: 189 GRFARNDETDQKPTV 203
GRFARNDE + P +
Sbjct: 229 GRFARNDEVFENPKI 243
>AT5G41380.1 | Symbols: | CCT motif family protein |
chr5:16562129-16563553 REVERSE LENGTH=307
Length = 307
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 71/170 (41%), Gaps = 36/170 (21%)
Query: 50 SEAQASPTLMQRSVSSHSLH---------------TNTKSNNNGTCHHPFSAFFAELLDS 94
S + S MQRS SS+S+ +N NN P +AFF+
Sbjct: 119 STIENSGRYMQRSFSSNSVEGKQTQVPFNIPMMDSSNLSYNN---LSSPENAFFSS---- 171
Query: 95 DQDTPAVRRVYSAGDLQRINXXXXXXXXXXXXXXXXXXXXXMIIEGMNRVCRYSPEEKKM 154
+RRVYS GDLQ E +V RYS EE+K
Sbjct: 172 -----QMRRVYSTGDLQN---------NMEMQRSSENSTMPFSEEQNFKVGRYSAEERKE 217
Query: 155 RIEXXXXXXXXXXXXXXXXYACRKTLADSRPRVRGRFARNDETDQKPTVQ 204
+I YACRKTLADSRPR+RGRFARNDE + P ++
Sbjct: 218 KISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFARNDEVVEIPNIE 267
>AT2G33350.1 | Symbols: | CCT motif family protein |
chr2:14134116-14136836 FORWARD LENGTH=410
Length = 410
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 36/56 (64%)
Query: 141 MNRVCRYSPEEKKMRIEXXXXXXXXXXXXXXXXYACRKTLADSRPRVRGRFARNDE 196
+N+V + SPE++K +I YACRKTLADSRPRVRGRFA+NDE
Sbjct: 300 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDE 355
>AT2G33350.2 | Symbols: | CCT motif family protein |
chr2:14134116-14136836 FORWARD LENGTH=409
Length = 409
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 36/56 (64%)
Query: 141 MNRVCRYSPEEKKMRIEXXXXXXXXXXXXXXXXYACRKTLADSRPRVRGRFARNDE 196
+N+V + SPE++K +I YACRKTLADSRPRVRGRFA+NDE
Sbjct: 299 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDE 354
>AT1G04500.1 | Symbols: | CCT motif family protein |
chr1:1221757-1224235 REVERSE LENGTH=386
Length = 386
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 34/56 (60%)
Query: 141 MNRVCRYSPEEKKMRIEXXXXXXXXXXXXXXXXYACRKTLADSRPRVRGRFARNDE 196
N+V + S E++K +I YACRKTLADSRPRVRGRFA+NDE
Sbjct: 277 FNKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDE 332
>AT3G12890.1 | Symbols: ASML2 | activator of spomin::LUC2 |
chr3:4099223-4100277 FORWARD LENGTH=251
Length = 251
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 143 RVCRYSPEEKKMRIEXXXXXXXXXXXXXXXXYACRKTLADSRPRVRGRFARNDET-DQKP 201
+V RYS EE+K RI Y CRKTLAD R RVRGRFARN++T +++P
Sbjct: 130 KVGRYSVEERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRRVRVRGRFARNNDTCEEQP 189
Query: 202 TVQWSH 207
+ +H
Sbjct: 190 HMSKNH 195