Miyakogusa Predicted Gene

Lj0g3v0276309.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276309.1 Non Chatacterized Hit- tr|K4CP84|K4CP84_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,36.73,1e-18,seg,NULL,CUFF.18370.1
         (302 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76980.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   115   4e-26
AT1G76980.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   114   6e-26
AT1G21390.1 | Symbols: emb2170 | embryo defective 2170 | chr1:74...   107   1e-23

>AT1G76980.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65
           Blast hits to 65 proteins in 23 species: Archae - 0;
           Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40;
           Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink).
           | chr1:28926466-28927242 REVERSE LENGTH=258
          Length = 258

 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 99/181 (54%), Gaps = 27/181 (14%)

Query: 72  ESGICSPPLWSRTPPRSPNHGKHYYRSLSPASKTQAIDRGQRELMAMVRGLPESNYELTL 131
           +SG+CSPPLW  +PP+SP H  + Y++LSP +K Q I RGQRELM MV  +PES YEL+L
Sbjct: 26  DSGVCSPPLWRTSPPKSPAHLHNNYQNLSPVTKAQVIARGQRELMDMVSKMPESCYELSL 85

Query: 132 KDLVEHQRXXXXXXXXXXXXXXXXXXXXXSNKNVQKKEKGSSRKVDSNKGQQVKRSGNID 191
           KDLVE                             +KK +   RK  S+K     R+G ++
Sbjct: 86  KDLVEVNTEEEKVFDEMPQR--------------EKKPRKVVRKTKSDKWVDPIRNGGVN 131

Query: 192 SGGFYLKMAFPISLGSKLKKNKKMEQLANSNSSRV------SPRTSVS-------DKDWW 238
           + GF LK+ FP+SLG+K K NKK +   + +S         SPR S+S       DKDWW
Sbjct: 132 NSGFLLKLVFPVSLGAKKKTNKKKDNDDDDSSVTSKRSWISSPRPSISDLSMKREDKDWW 191

Query: 239 K 239
           K
Sbjct: 192 K 192


>AT1G76980.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: embryo defective 2170
           (TAIR:AT1G21390.1); Has 61 Blast hits to 61 proteins in
           18 species: Archae - 0; Bacteria - 8; Metazoa - 8; Fungi
           - 2; Plants - 40; Viruses - 3; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:28926086-28927242 REVERSE
           LENGTH=250
          Length = 250

 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 99/181 (54%), Gaps = 27/181 (14%)

Query: 72  ESGICSPPLWSRTPPRSPNHGKHYYRSLSPASKTQAIDRGQRELMAMVRGLPESNYELTL 131
           +SG+CSPPLW  +PP+SP H  + Y++LSP +K Q I RGQRELM MV  +PES YEL+L
Sbjct: 26  DSGVCSPPLWRTSPPKSPAHLHNNYQNLSPVTKAQVIARGQRELMDMVSKMPESCYELSL 85

Query: 132 KDLVEHQRXXXXXXXXXXXXXXXXXXXXXSNKNVQKKEKGSSRKVDSNKGQQVKRSGNID 191
           KDLVE                             +KK +   RK  S+K     R+G ++
Sbjct: 86  KDLVEVNTEEEKVFDEMPQR--------------EKKPRKVVRKTKSDKWVDPIRNGGVN 131

Query: 192 SGGFYLKMAFPISLGSKLKKNKKMEQLANSNSSRV------SPRTSVS-------DKDWW 238
           + GF LK+ FP+SLG+K K NKK +   + +S         SPR S+S       DKDWW
Sbjct: 132 NSGFLLKLVFPVSLGAKKKTNKKKDNDDDDSSVTSKRSWISSPRPSISDLSMKREDKDWW 191

Query: 239 K 239
           K
Sbjct: 192 K 192


>AT1G21390.1 | Symbols: emb2170 | embryo defective 2170 |
           chr1:7489385-7490554 REVERSE LENGTH=248
          Length = 248

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 96/176 (54%), Gaps = 20/176 (11%)

Query: 72  ESGICSPPLWSRTPPRSP--NHGKHYYRSLSPASKTQAIDRGQRELMAMVRGLPESNYEL 129
           +SG+CSP LW  +PP+SP   H    Y SLSP SK QAI RGQRELM MV  +PES YEL
Sbjct: 26  DSGVCSPTLWRTSPPKSPPPFHRPEDYWSLSPDSKAQAIARGQRELMEMVSKMPESCYEL 85

Query: 130 TLKDLVEHQRXXXXXXXXXXXXXXXXXXXXXSNKNVQKKEKGSSRKVDSNKGQQVKRSGN 189
           +LKDLVE +                       +K V+K +  S ++VD N      RSG 
Sbjct: 86  SLKDLVEVK---VNQENERKVFDELPKRANRQSKVVRKTK--SDKRVDPN------RSGG 134

Query: 190 IDSGGFYLKMAFPISLGSKLKKNKKMEQLANSNSSRVSPRTSVS-------DKDWW 238
            ++ GF LK+ F +SLG+     KK ++     + +VSPR S+S       DK+WW
Sbjct: 135 GNNSGFLLKIMFLVSLGAMKDTTKKKKKKKKDEACKVSPRPSISEETVKVEDKEWW 190