Miyakogusa Predicted Gene

Lj0g3v0276279.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276279.1 tr|O65659|O65659_ARATH At4g39720 OS=Arabidopsis
thaliana GN=AT4g39720 PE=2 SV=1,39.91,2e-18,seg,NULL;
VQ,VQ,CUFF.18324.1
         (433 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65170.1 | Symbols:  | VQ motif-containing protein | chr5:260...   100   4e-21
AT4G39720.1 | Symbols:  | VQ motif-containing protein | chr4:184...    92   7e-19
AT1G35830.1 | Symbols:  | VQ motif-containing protein | chr1:133...    86   7e-17

>AT5G65170.1 | Symbols:  | VQ motif-containing protein |
           chr5:26041218-26042306 FORWARD LENGTH=362
          Length = 362

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/141 (45%), Positives = 82/141 (58%), Gaps = 10/141 (7%)

Query: 92  VWSRSSSAAVR-TEPNQSDLSNNQAFLLNQFAAGAATVPGSQQLSMPPEXXXXXXXXXXX 150
           +WS +++     + P    +S+ Q F  N       TVP +   S               
Sbjct: 76  LWSTTATQPTDGSRPVPPPISSEQVFFTNPLQQNLRTVPNTNTTS----PICSVPTDKKN 131

Query: 151 XXXXVRNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFS--SSHFPRTRLDLF 208
                RNPKKRSR SRRAPTTVLTTDT+NFRAMVQEFTG P+ PF+  SS FPR+R DLF
Sbjct: 132 GLATTRNPKKRSRVSRRAPTTVLTTDTSNFRAMVQEFTGNPSTPFTGLSSSFPRSRFDLF 191

Query: 209 GASSAASSTPPYLLRPFAQKI 229
           G+SS++SS P   ++PF  K+
Sbjct: 192 GSSSSSSSRP---MKPFPHKL 209


>AT4G39720.1 | Symbols:  | VQ motif-containing protein |
           chr4:18429992-18430864 REVERSE LENGTH=290
          Length = 290

 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 61/81 (75%), Gaps = 6/81 (7%)

Query: 155 VRNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPF--SSSHFPRTRLDLFGASS 212
           ++  KKRSRASRRAPTTVLTTDT+NFRAMVQEFTGIPAPP   ++S    TRL+ F   S
Sbjct: 111 IKKTKKRSRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPLFNNNSIVNTTRLNTFLGLS 170

Query: 213 AAS----STPPYLLRPFAQKI 229
           ++S    +T   LLRPFAQK+
Sbjct: 171 SSSPNTYNTNNLLLRPFAQKL 191


>AT1G35830.1 | Symbols:  | VQ motif-containing protein |
           chr1:13321214-13322122 REVERSE LENGTH=302
          Length = 302

 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/74 (62%), Positives = 54/74 (72%), Gaps = 3/74 (4%)

Query: 156 RNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFSSSHFPRT-RLDLFGASSAA 214
           RNP+KR+RASRRAPTTVLTTDT+NFRAMVQEFTG+PA PFS      T R D+F + S  
Sbjct: 97  RNPRKRTRASRRAPTTVLTTDTSNFRAMVQEFTGVPASPFSHPFSSTTRRFDIFRSPSDP 156

Query: 215 SSTPPYLLRPFAQK 228
            +  P+  RP  QK
Sbjct: 157 LTYNPF--RPIPQK 168