Miyakogusa Predicted Gene

Lj0g3v0276039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276039.1 Non Chatacterized Hit- tr|I1J4E4|I1J4E4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18187
PE,88.53,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Mnd1,Meiotic nuclear division protein 1; coiled-coi,CUFF.18308.1
         (218 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29170.1 | Symbols: ATMND1 | Mnd1 family protein | chr4:14382...   345   1e-95
AT4G29170.2 | Symbols: ATMND1 | Mnd1 family protein | chr4:14383...   317   4e-87

>AT4G29170.1 | Symbols: ATMND1 | Mnd1 family protein |
           chr4:14382985-14385128 FORWARD LENGTH=230
          Length = 230

 Score =  345 bits (885), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 164/215 (76%), Positives = 189/215 (87%)

Query: 1   MSKKRGLSLEEKREKMLQIFYESQDFYLLKELEKMGPRKGVIAQSVKDVIQSLVDDDLVS 60
           MSKKRGLSLEEKREKMLQIFYESQDF+LLKELEKMGP+KGVI+QSVKDVIQSLVDDDLV+
Sbjct: 1   MSKKRGLSLEEKREKMLQIFYESQDFFLLKELEKMGPKKGVISQSVKDVIQSLVDDDLVA 60

Query: 61  KDKIGTSVYFWSLPSCAGNQLRNVTCKLDSELQGSKNRHSQLVEQCETLKKGREESDERE 120
           KDKIG S+YFWSLPSCAGNQLR+V  KL+S+LQGS  R ++LV+QCE LKKGREES+ER 
Sbjct: 61  KDKIGISIYFWSLPSCAGNQLRSVRQKLESDLQGSNKRLAELVDQCEALKKGREESEERT 120

Query: 121 VALADLKAIELKHKELKDELAKFRDNDPAAFEAMKDAIGVAHASANRWTDNIFTLKQWCT 180
            AL  LK IE KHK+LK+E+ +F DNDPA  EA ++AI VAH SANRWTDNIFTL+QWC+
Sbjct: 121 EALTQLKDIEKKHKDLKNEMVQFADNDPATLEAKRNAIEVAHQSANRWTDNIFTLRQWCS 180

Query: 181 NNFPQAKEQLENLYKEVGITDDFDYLELAPVLLKA 215
           NNFPQAKEQLE+LY E GIT+DFDY+EL+   L +
Sbjct: 181 NNFPQAKEQLEHLYTEAGITEDFDYIELSSFPLSS 215


>AT4G29170.2 | Symbols: ATMND1 | Mnd1 family protein |
           chr4:14383594-14385128 FORWARD LENGTH=215
          Length = 215

 Score =  317 bits (812), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 149/200 (74%), Positives = 174/200 (87%)

Query: 16  MLQIFYESQDFYLLKELEKMGPRKGVIAQSVKDVIQSLVDDDLVSKDKIGTSVYFWSLPS 75
           MLQIFYESQDF+LLKELEKMGP+KGVI+QSVKDVIQSLVDDDLV+KDKIG S+YFWSLPS
Sbjct: 1   MLQIFYESQDFFLLKELEKMGPKKGVISQSVKDVIQSLVDDDLVAKDKIGISIYFWSLPS 60

Query: 76  CAGNQLRNVTCKLDSELQGSKNRHSQLVEQCETLKKGREESDEREVALADLKAIELKHKE 135
           CAGNQLR+V  KL+S+LQGS  R ++LV+QCE LKKGREES+ER  AL  LK IE KHK+
Sbjct: 61  CAGNQLRSVRQKLESDLQGSNKRLAELVDQCEALKKGREESEERTEALTQLKDIEKKHKD 120

Query: 136 LKDELAKFRDNDPAAFEAMKDAIGVAHASANRWTDNIFTLKQWCTNNFPQAKEQLENLYK 195
           LK+E+ +F DNDPA  EA ++AI VAH SANRWTDNIFTL+QWC+NNFPQAKEQLE+LY 
Sbjct: 121 LKNEMVQFADNDPATLEAKRNAIEVAHQSANRWTDNIFTLRQWCSNNFPQAKEQLEHLYT 180

Query: 196 EVGITDDFDYLELAPVLLKA 215
           E GIT+DFDY+EL+   L +
Sbjct: 181 EAGITEDFDYIELSSFPLSS 200