Miyakogusa Predicted Gene

Lj0g3v0275819.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0275819.1 Non Chatacterized Hit- tr|I3SST4|I3SST4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.97,0,seg,NULL;
LDL receptor-like module,Low-density lipoprotein (LDL) receptor class
A repeat; N-LINKED O,CUFF.18291.1
         (196 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42390.1 | Symbols:  | protein kinase C substrate, heavy chai...   188   2e-48
AT5G56360.1 | Symbols: PSL4 | calmodulin-binding protein | chr5:...   148   2e-36

>AT2G42390.1 | Symbols:  | protein kinase C substrate, heavy
           chain-related | chr2:17651381-17652509 REVERSE
           LENGTH=212
          Length = 212

 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 104/125 (83%), Gaps = 4/125 (3%)

Query: 13  CLLLFASTAGCL----SHPSLLGVHPLDEKYYGSEVIKCKDGSKSFSRDRINDNFCDCPD 68
           C++L +S A  +    S   L+GVHPLDEKY+ S+VIKCKDGSKSF+RDR+NDNFCDC D
Sbjct: 5   CVVLCSSLAVVVISVASTSPLVGVHPLDEKYFDSDVIKCKDGSKSFTRDRLNDNFCDCLD 64

Query: 69  GTDEPGTSACPKGKFYCKNLGSKPQFIFSSHVNDNFCDCCDGSDEYDGTIHCPNTCVMGG 128
           GTDEPGTSACP GKFYC+N+GS P+F++SS VND  CDCCDGSDEY+ +IHCPNTC+MGG
Sbjct: 65  GTDEPGTSACPNGKFYCRNIGSSPKFVYSSRVNDRICDCCDGSDEYESSIHCPNTCIMGG 124

Query: 129 NSEYM 133
           N  Y+
Sbjct: 125 NVNYI 129


>AT5G56360.1 | Symbols: PSL4 | calmodulin-binding protein |
           chr5:22823586-22827950 REVERSE LENGTH=647
          Length = 647

 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 82/117 (70%), Gaps = 3/117 (2%)

Query: 29  LLGVHPLDEKYY-GSEVIKCKDGSKSFSRDRINDNFCDCPDGTDEPGTSACPKGKFYCKN 87
            LG+ P DEKYY  S  IKCKDGSK F++ ++ND+FCDC DGTDEPGTSACP GKFYC+N
Sbjct: 37  FLGISPQDEKYYKSSSEIKCKDGSKKFTKAQLNDDFCDCSDGTDEPGTSACPTGKFYCRN 96

Query: 88  LGSKPQFIFSSHVNDNFCDCCDGSDEYDGTIHCPNTCVMGGNSEYMIGNYNKKVSGF 144
            G  P  +FSS VND  CDCCDGSDEYDG + C NTC   G +     N  KK+  +
Sbjct: 97  AGHSPVILFSSRVNDGICDCCDGSDEYDGHVSCQNTCWEAGKA--ARENLKKKIETY 151