Miyakogusa Predicted Gene

Lj0g3v0275789.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0275789.1 Non Chatacterized Hit- tr|K3WGV0|K3WGV0_PYTUL
Uncharacterized protein OS=Pythium ultimum
GN=PYU1_G00,45.19,2e-17,UNCHARACTERIZED,NULL; REGULATOR OF CHROMOSOME
CONDENSATION,NULL; RCC1_3,Regulator of chromosome
cond,NODE_49020_length_566_cov_168.010605.path2.1
         (160 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26100.1 | Symbols:  | Regulator of chromosome condensation (...   234   2e-62
AT3G26100.2 | Symbols:  | Regulator of chromosome condensation (...   234   2e-62
AT3G03790.3 | Symbols:  | ankyrin repeat family protein / regula...    63   1e-10
AT3G03790.2 | Symbols:  | ankyrin repeat family protein / regula...    62   1e-10
AT3G03790.1 | Symbols:  | ankyrin repeat family protein / regula...    62   1e-10
AT3G15430.2 | Symbols:  | Regulator of chromosome condensation (...    62   2e-10
AT3G15430.1 | Symbols:  | Regulator of chromosome condensation (...    62   2e-10
AT5G12350.1 | Symbols:  | Regulator of chromosome condensation (...    57   4e-09
AT5G19420.2 | Symbols:  | Regulator of chromosome condensation (...    57   6e-09
AT5G19420.1 | Symbols:  | Regulator of chromosome condensation (...    57   7e-09
AT5G42140.1 | Symbols:  | Regulator of chromosome condensation (...    57   8e-09
AT3G55580.1 | Symbols:  | Regulator of chromosome condensation (...    55   2e-08
AT3G53830.1 | Symbols:  | Regulator of chromosome condensation (...    55   2e-08
AT5G63860.1 | Symbols: UVR8 | Regulator of chromosome condensati...    51   3e-07
AT1G69710.1 | Symbols:  | Regulator of chromosome condensation (...    50   9e-07
AT5G16040.1 | Symbols:  | Regulator of chromosome condensation (...    50   9e-07
AT3G02510.1 | Symbols:  | Regulator of chromosome condensation (...    49   1e-06
AT1G27060.1 | Symbols:  | Regulator of chromosome condensation (...    49   1e-06
AT1G19880.1 | Symbols:  | Regulator of chromosome condensation (...    49   2e-06
AT1G76950.1 | Symbols: PRAF1 | Regulator of chromosome condensat...    48   3e-06
AT3G02510.2 | Symbols:  | Regulator of chromosome condensation (...    47   4e-06

>AT3G26100.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:9538458-9540149 FORWARD
           LENGTH=432
          Length = 432

 Score =  234 bits (597), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/160 (69%), Positives = 130/160 (81%)

Query: 1   MCQKRAIFKPMNMEERENLKQRCGGSWKLVLRYLLAGEACSRREKSQAIAGPGHSIAVTS 60
           MC KR IFKPMN EER+ +K+RCGGSWKLVLR+LLAGEAC RREKSQA+AGPGHS+AVTS
Sbjct: 1   MCNKRVIFKPMNEEERQEMKRRCGGSWKLVLRFLLAGEACCRREKSQAVAGPGHSVAVTS 60

Query: 61  KGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDSGQVYAFG 120
           KG VY+FG N+SGQLGHG T++E R +P+R+L              TMLISD G+VYA G
Sbjct: 61  KGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISDDGKVYACG 120

Query: 121 KDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIGNFF 160
           K+SFG+AEYG QG+K V +PQLV SLKNIFVVQAAIGN+F
Sbjct: 121 KESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGNYF 160



 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 50  AGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTML 109
           AG  H+  V   G V ++G    G LGHG  + E  P+ +  L              T +
Sbjct: 266 AGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFV 325

Query: 110 ISDSGQVYAFG---KDSFG-DAEYGVQGSK--TVISPQLVESLKNIF--VVQAAIGN 158
           +SD G VY+FG     S G    +  QG++   V+SP +V SLK +   +VQ ++ N
Sbjct: 326 VSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVLSPTVVTSLKQVNERMVQISLTN 382


>AT3G26100.2 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:9538063-9540149 FORWARD
           LENGTH=532
          Length = 532

 Score =  234 bits (596), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/160 (69%), Positives = 130/160 (81%)

Query: 1   MCQKRAIFKPMNMEERENLKQRCGGSWKLVLRYLLAGEACSRREKSQAIAGPGHSIAVTS 60
           MC KR IFKPMN EER+ +K+RCGGSWKLVLR+LLAGEAC RREKSQA+AGPGHS+AVTS
Sbjct: 101 MCNKRVIFKPMNEEERQEMKRRCGGSWKLVLRFLLAGEACCRREKSQAVAGPGHSVAVTS 160

Query: 61  KGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDSGQVYAFG 120
           KG VY+FG N+SGQLGHG T++E R +P+R+L              TMLISD G+VYA G
Sbjct: 161 KGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISDDGKVYACG 220

Query: 121 KDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIGNFF 160
           K+SFG+AEYG QG+K V +PQLV SLKNIFVVQAAIGN+F
Sbjct: 221 KESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGNYF 260



 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 50  AGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTML 109
           AG  H+  V   G V ++G    G LGHG  + E  P+ +  L              T +
Sbjct: 366 AGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFV 425

Query: 110 ISDSGQVYAFG---KDSFG-DAEYGVQGSK--TVISPQLVESLKNIF--VVQAAIGN 158
           +SD G VY+FG     S G    +  QG++   V+SP +V SLK +   +VQ ++ N
Sbjct: 426 VSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVLSPTVVTSLKQVNERMVQISLTN 482


>AT3G03790.3 | Symbols:  | ankyrin repeat family protein / regulator
           of chromosome condensation (RCC1) family protein |
           chr3:963195-968011 FORWARD LENGTH=1099
          Length = 1099

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%)

Query: 41  SRREKSQAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXX 100
           SRR K+ A A   H++  T  G VY++GSN  GQLG+ + D +  PR + +L        
Sbjct: 244 SRRVKAVA-AAKHHTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSL-KAKIVAV 301

Query: 101 XXXXXXTMLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLK 147
                 T ++SD G+V+ +G +  G   YG   S +  SP+LV+ LK
Sbjct: 302 SAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLK 348


>AT3G03790.2 | Symbols:  | ankyrin repeat family protein / regulator
           of chromosome condensation (RCC1) family protein |
           chr3:963195-967857 FORWARD LENGTH=1081
          Length = 1081

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%)

Query: 41  SRREKSQAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXX 100
           SRR K+ A A   H++  T  G VY++GSN  GQLG+ + D +  PR + +L        
Sbjct: 244 SRRVKAVA-AAKHHTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSL-KAKIVAV 301

Query: 101 XXXXXXTMLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLK 147
                 T ++SD G+V+ +G +  G   YG   S +  SP+LV+ LK
Sbjct: 302 SAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLK 348


>AT3G03790.1 | Symbols:  | ankyrin repeat family protein / regulator
           of chromosome condensation (RCC1) family protein |
           chr3:963195-967857 FORWARD LENGTH=1078
          Length = 1078

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%)

Query: 41  SRREKSQAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXX 100
           SRR K+ A A   H++  T  G VY++GSN  GQLG+ + D +  PR + +L        
Sbjct: 241 SRRVKAVA-AAKHHTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSL-KAKIVAV 298

Query: 101 XXXXXXTMLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLK 147
                 T ++SD G+V+ +G +  G   YG   S +  SP+LV+ LK
Sbjct: 299 SAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLK 345


>AT3G15430.2 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:5209408-5211562 FORWARD
           LENGTH=488
          Length = 488

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 47  QAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXX--XXXXXXXXX 104
           Q  AGP + +AVT  G+VYSFGS S+  LGHG   +E +PR I+                
Sbjct: 273 QIAAGPSYVLAVTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFKRKGIHILRVSAGD 332

Query: 105 XXTMLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAA 155
              + +  +G+VY +GK   G   +G +  K  I+PQ++ +L N   VQ  
Sbjct: 333 EHAVALDSNGRVYTWGKGYCGALGHGDENDK--ITPQVLVNLNNCLAVQVC 381



 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 50  AGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTML 109
           AG  H++A+ S G VY++G    G LGHG  +++  P+ +  L              T +
Sbjct: 330 AGDEHAVALDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFV 389

Query: 110 ISDSGQVYAFGKDSFGDAEYGVQG-SKTVISPQLVESLKNIFVVQAAIGNF 159
           + + G +Y FG   FG   +  +G S  V+ P+++E LK   V Q + G +
Sbjct: 390 LVEGGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTGLY 440



 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 8/166 (4%)

Query: 1   MCQKRAIFKPMNMEERENLKQRCGGSWKLVLRYLLAGEACS-----RREKSQAIAGPGHS 55
           +C    ++  M +  ++ L   C G+WK +  +L + E  S      + K Q   G  H+
Sbjct: 64  LCSMHPVYVGMGLTTQKELFANCEGNWKRLFSFLQSVEQSSDMVETSQGKMQIATGKYHT 123

Query: 56  IAVTSKGAVYSFGSNSSGQLGHGT-TDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDSG 114
           + + +   VYS G + SG L HG+ T +     PI                 +  +  SG
Sbjct: 124 LLINNS-KVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQSG 182

Query: 115 QVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIGNFF 160
           QV   G +S     + +  S+ +  P+LVE+LK     Q A G  F
Sbjct: 183 QVLTCGDNSSHCCGH-LDTSRPIFRPKLVEALKGTPCKQVAAGLHF 227


>AT3G15430.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:5209408-5211562 FORWARD
           LENGTH=488
          Length = 488

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 47  QAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXX--XXXXXXXXX 104
           Q  AGP + +AVT  G+VYSFGS S+  LGHG   +E +PR I+                
Sbjct: 273 QIAAGPSYVLAVTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFKRKGIHILRVSAGD 332

Query: 105 XXTMLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAA 155
              + +  +G+VY +GK   G   +G +  K  I+PQ++ +L N   VQ  
Sbjct: 333 EHAVALDSNGRVYTWGKGYCGALGHGDENDK--ITPQVLVNLNNCLAVQVC 381



 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 50  AGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTML 109
           AG  H++A+ S G VY++G    G LGHG  +++  P+ +  L              T +
Sbjct: 330 AGDEHAVALDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFV 389

Query: 110 ISDSGQVYAFGKDSFGDAEYGVQG-SKTVISPQLVESLKNIFVVQAAIGNF 159
           + + G +Y FG   FG   +  +G S  V+ P+++E LK   V Q + G +
Sbjct: 390 LVEGGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTGLY 440



 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 8/166 (4%)

Query: 1   MCQKRAIFKPMNMEERENLKQRCGGSWKLVLRYLLAGEACS-----RREKSQAIAGPGHS 55
           +C    ++  M +  ++ L   C G+WK +  +L + E  S      + K Q   G  H+
Sbjct: 64  LCSMHPVYVGMGLTTQKELFANCEGNWKRLFSFLQSVEQSSDMVETSQGKMQIATGKYHT 123

Query: 56  IAVTSKGAVYSFGSNSSGQLGHGT-TDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDSG 114
           + + +   VYS G + SG L HG+ T +     PI                 +  +  SG
Sbjct: 124 LLINNS-KVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQSG 182

Query: 115 QVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIGNFF 160
           QV   G +S     + +  S+ +  P+LVE+LK     Q A G  F
Sbjct: 183 QVLTCGDNSSHCCGH-LDTSRPIFRPKLVEALKGTPCKQVAAGLHF 227


>AT5G12350.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:3995789-4000545 FORWARD LENGTH=1075
          Length = 1075

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 51  GPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIR-TLXXXXXXXXXXXXXXTML 109
           G  HS AVT  G +Y++G    G LGHG     W P+ +   L              T +
Sbjct: 368 GEFHSCAVTLSGDLYTWGKGDFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACGPYHTAV 427

Query: 110 ISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIG 157
           ++ +GQ++ FG  +FG   +G +  K+V  P+ V+SLK +  V+AA G
Sbjct: 428 VTSAGQLFTFGDGTFGVLGHGDK--KSVFIPREVDSLKGLRTVRAACG 473



 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 5/142 (3%)

Query: 21  QRCGGSWKLVLRYLL--AGEACSRREKSQAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHG 78
           +R G S+ + +  LL  A E+    +      G  H++ VT +G  +S+G  S G+LGHG
Sbjct: 284 RRVGSSFDIKMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHG 343

Query: 79  TTDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDSGQVYAFGKDSFGDAEYGVQGSKTVI 138
                 +P+ I  L              +  ++ SG +Y +GK  FG   +G + S  V 
Sbjct: 344 VDSNIQQPKLIDALNTTNIELVACGEFHSCAVTLSGDLYTWGKGDFGVLGHGNEVSHWV- 402

Query: 139 SPQLVE-SLKNIFVVQAAIGNF 159
            P+ V   L+ I V   A G +
Sbjct: 403 -PKRVNFLLEGIHVSSIACGPY 423


>AT5G19420.2 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:6547945-6552981 REVERSE LENGTH=1139
          Length = 1139

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 51  GPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXX-XXXTML 109
           G  HS AVT  G +Y++G    G LGHG     W P+ +  L               T +
Sbjct: 406 GEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTAV 465

Query: 110 ISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIG 157
           ++ +GQ++ FG  +FG   +G +  K+V  P+ V+SLK +  V+AA G
Sbjct: 466 VTSAGQLFTFGDGTFGVLGHGDR--KSVFIPREVDSLKGLRTVRAACG 511



 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 5/142 (3%)

Query: 21  QRCGGSWKLVLRYLL--AGEACSRREKSQAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHG 78
            R G S ++ +  LL  A E+    +      G  H++ VT +G  +S+G  S G+LGHG
Sbjct: 322 HRVGSSLEIKMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHG 381

Query: 79  TTDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDSGQVYAFGKDSFGDAEYGVQGSKTVI 138
                  P+ I  L              +  ++ SG +Y +GK  FG   +G + S  V 
Sbjct: 382 VDSNVQHPKLIDALNTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSHWV- 440

Query: 139 SPQLVESL-KNIFVVQAAIGNF 159
            P+ V  L + I V   A G +
Sbjct: 441 -PKRVNFLMEGIHVSSIACGPY 461


>AT5G19420.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:6547945-6552866 REVERSE LENGTH=1105
          Length = 1105

 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 51  GPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXX-XXXTML 109
           G  HS AVT  G +Y++G    G LGHG     W P+ +  L               T +
Sbjct: 372 GEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTAV 431

Query: 110 ISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIG 157
           ++ +GQ++ FG  +FG   +G +  K+V  P+ V+SLK +  V+AA G
Sbjct: 432 VTSAGQLFTFGDGTFGVLGHGDR--KSVFIPREVDSLKGLRTVRAACG 477


>AT5G42140.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:16837547-16841640 REVERSE LENGTH=1073
          Length = 1073

 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 5/110 (4%)

Query: 51  GPGHSIAVTSKGAVYSFG--SNSSGQLGHGTTDEEWRPRPIR-TLXXXXXXXXXXXXXXT 107
           G  H+ AVT  G +Y++G  ++++G LGHGT    W P+ I   L              T
Sbjct: 332 GEFHTCAVTMTGEIYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQIASVSCGPWHT 391

Query: 108 MLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIG 157
            LI+ +GQ++ FG  +FG   +G +  +TV  P+ VESL  +  +  A G
Sbjct: 392 ALITSTGQLFTFGDGTFGVLGHGDK--ETVFYPREVESLSGLRTIAVACG 439


>AT3G55580.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:20612766-20615730 FORWARD
           LENGTH=488
          Length = 488

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 54  HSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDS 113
           HS  +T  GA+ +FG    GQ G G+TD+E  P  + +L              T   S  
Sbjct: 322 HSAVITDTGALLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEEVAAGLWHTTCASSD 381

Query: 114 GQVYAFGKDSFGDAEYGVQGSKTVISPQLVES--LKNIFVVQAAIG 157
           G VYAFG + FG    G   ++T+  P+L+E+  L+N+ V   + G
Sbjct: 382 GDVYAFGGNQFGQLGTGCDQAETL--PKLLEAPNLENVNVKTISCG 425


>AT3G53830.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:19940814-19943592 FORWARD
           LENGTH=472
          Length = 472

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 39  ACSRREKSQAI----AGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXX 94
           A + RE  Q I     G  HS A+T  G + +FG    GQ GHG T+++ RP  +  +  
Sbjct: 287 AQASREPGQYIKAISCGGRHSAAITDAGGLITFGWGLYGQCGHGNTNDQLRPMAVSEVKS 346

Query: 95  XXXXXXXXXXXXTMLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVE 144
                       T+ IS  G+VYAFG + FG  + G       I P+L++
Sbjct: 347 VRMESVAAGLWHTICISSDGKVYAFGGNQFG--QLGTGTDHAEILPRLLD 394


>AT5G63860.1 | Symbols: UVR8 | Regulator of chromosome condensation
           (RCC1) family protein | chr5:25554821-25558587 REVERSE
           LENGTH=440
          Length = 440

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 2/104 (1%)

Query: 54  HSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDS 113
           H+I+V+  GA+Y++G +  GQLGHG  ++   P  +  L              TM ++  
Sbjct: 235 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD 294

Query: 114 GQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIG 157
           G++Y +G + FG  + GV  +    SP  V    +  VVQ + G
Sbjct: 295 GKLYGWGWNKFG--QVGVGNNLDQCSPVQVRFPDDQKVVQVSCG 336



 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 50  AGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTML 109
           AG  HS+A+ S   V S+G    GQLGHG  ++   P  +  L              T+ 
Sbjct: 22  AGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVA 81

Query: 110 ISDSG-QVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIGN 158
            S SG +VY++G   FG   +G   S  + +P  +++L  I + Q A G+
Sbjct: 82  YSQSGMEVYSWGWGDFGRLGHG--NSSDLFTPLPIKALHGIRIKQIACGD 129



 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 47  QAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXX 106
           Q   G  H +AVT +G V S+G N +GQLG G T++   P+ I+                
Sbjct: 124 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 183

Query: 107 TMLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVES 145
           T  +++ G +Y +G   +G+   G +  + V  P+ V S
Sbjct: 184 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTS 220


>AT1G69710.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr1:26222325-26226530 FORWARD LENGTH=1041
          Length = 1041

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 51  GPGHSIAVTSKGAVYSF--GSNSSGQLGHGTTDEEWRPRPIR-TLXXXXXXXXXXXXXXT 107
           G  H+ A+T  G +YS+  G+++   LGHG     W P+ +   L              T
Sbjct: 360 GDFHTCAITQSGDLYSWGDGTHNVDLLGHGNESSCWIPKRVTGDLQGLYVSDVACGPWHT 419

Query: 108 MLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIG 157
            +++ SGQ++ FG  +FG   +G + S +V  P+ VESL  + V + A G
Sbjct: 420 AVVASSGQLFTFGDGTFGALGHGDRRSTSV--PREVESLIGLIVTKVACG 467


>AT5G16040.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr5:5240860-5243308 REVERSE
           LENGTH=396
          Length = 396

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 49/104 (47%)

Query: 54  HSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDS 113
           H++A+   G ++++G+N  GQLG G T     P P++ L              +  +++ 
Sbjct: 207 HNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAGGWHSTALTNE 266

Query: 114 GQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIG 157
           G+VY +G+   G   +G     + + PQ V  L    ++Q + G
Sbjct: 267 GEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCG 310



 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 58  VTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDSGQVY 117
           + S  +V ++GS   GQLG GT +E+     +  L              ++ I D G+++
Sbjct: 1   MASATSVIAWGSGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLF 60

Query: 118 AFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIGNFF 160
            +G +  G   +  + +KT  +P LV+SL N+ +VQAAIG + 
Sbjct: 61  TWGWNQRGTLGHPPE-TKTESTPSLVKSLANVKIVQAAIGGWH 102


>AT3G02510.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:522086-524536 REVERSE
           LENGTH=393
          Length = 393

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 47/104 (45%)

Query: 54  HSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDS 113
           H++A+   G + ++G+N  GQLG G T     P P++ L              +  ++D 
Sbjct: 207 HNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHPVPVQGLDDLTLVDIAAGGWHSTALTDK 266

Query: 114 GQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIG 157
           G+VY +G+   G    G     + + PQ V  L    ++Q + G
Sbjct: 267 GEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQVSCG 310


>AT1G27060.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr1:9395023-9396673 FORWARD
           LENGTH=386
          Length = 386

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 2/112 (1%)

Query: 46  SQAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXX 105
           S    G  H IA+TS G V+++G  SSGQLGHG       P+ +                
Sbjct: 51  SMLACGGAHVIALTSGGKVFTWGRGSSGQLGHGDILNITLPKLVSFFDDSVITQAAAGWS 110

Query: 106 XTMLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIG 157
            +  +SDSG ++  G  SFG   +G   + ++ +P  V    N  V   A G
Sbjct: 111 HSGFVSDSGCIFTCGNGSFGQLGHG--DTLSLSTPAKVSHFNNDSVKMVACG 160


>AT1G19880.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr1:6900648-6903818 REVERSE
           LENGTH=538
          Length = 538

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 54  HSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDS 113
           H +A+  +G  Y++G N  GQLGHG   +  RP  +  L              T+++SD 
Sbjct: 69  HCVALDVEGRCYTWGRNEKGQLGHGDMIQRDRPTVVSGLSKHKIVKAAAGRNHTVVVSDD 128

Query: 114 GQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIGNF 159
           GQ   FG + +G  + G+  +K       VES     VV   + N 
Sbjct: 129 GQSLGFGWNKYG--QLGLGSAKNGFVSVEVESTPLPCVVSDEVTNV 172


>AT1G76950.1 | Symbols: PRAF1 | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr1:28906952-28911325 FORWARD LENGTH=1103
          Length = 1103

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 51  GPGHSIAVTSKGAVYSFG--SNSSGQLGHGTTDEEWRPRPIR-TLXXXXXXXXXXXXXXT 107
           G  H+ AVT  G +Y++G  +++ G LGHG+    W P+ I  +L              T
Sbjct: 342 GEFHTCAVTLAGELYTWGDGTHNVGLLGHGSDISHWIPKRIAGSLEGLHVASVSCGPWHT 401

Query: 108 MLISDSGQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQAAIG 157
            LI+  G+++ FG  +FG   +G +  +TV  P+ VESL  +  +  + G
Sbjct: 402 ALITSYGRLFTFGDGTFGVLGHGDK--ETVQYPREVESLSGLRTIAVSCG 449


>AT3G02510.2 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:522524-524536 REVERSE
           LENGTH=310
          Length = 310

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 45/100 (45%)

Query: 54  HSIAVTSKGAVYSFGSNSSGQLGHGTTDEEWRPRPIRTLXXXXXXXXXXXXXXTMLISDS 113
           H++A+   G + ++G+N  GQLG G T     P P++ L              +  ++D 
Sbjct: 207 HNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHPVPVQGLDDLTLVDIAAGGWHSTALTDK 266

Query: 114 GQVYAFGKDSFGDAEYGVQGSKTVISPQLVESLKNIFVVQ 153
           G+VY +G+   G    G     + + PQ V  L    ++Q
Sbjct: 267 GEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQ 306