Miyakogusa Predicted Gene

Lj0g3v0275659.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0275659.2 Non Chatacterized Hit- tr|Q69KN1|Q69KN1_ORYSJ
Putative SMA-9 class B OS=Oryza sativa subsp.
japonica,27.41,0.000004,seg,NULL,CUFF.18278.2
         (465 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G25540.2 | Symbols: PFT1 | phytochrome and flowering time reg...    54   3e-07
AT1G25540.1 | Symbols: PFT1 | phytochrome and flowering time reg...    53   4e-07

>AT1G25540.2 | Symbols: PFT1 | phytochrome and flowering time
           regulatory protein (PFT1) | chr1:8969392-8973301 REVERSE
           LENGTH=727
          Length = 727

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 3/125 (2%)

Query: 341 YVQTWEGSLAAKFQPNHVSLIKAQAFSKATPPFSLTLQWSSRLEISNFLPEKAVNYTKCS 400
           YV+ WEG+L+ + Q   V + + + +  A+   SL   W   ++I   + +  +N  K  
Sbjct: 447 YVKVWEGNLSGQRQGQPVLITRLEGYRSASASDSLAANWPPTMQIVRLISQDHMN-NKQY 505

Query: 401 LSRPVYYVFLNTLSKSNKLYEHLLSKKLCAKIDFSHQSLILSPTEKKYFFLGSVFPRGTT 460
           + +  + VF   +S+   L + L  KKLCA I    Q+L+LS ++K    +G +FP    
Sbjct: 506 VGKADFLVF-RAMSQHGFLGQ-LQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMV 563

Query: 461 FVEPR 465
             +P+
Sbjct: 564 VFKPQ 568


>AT1G25540.1 | Symbols: PFT1 | phytochrome and flowering time
           regulatory protein (PFT1) | chr1:8969392-8974446 REVERSE
           LENGTH=836
          Length = 836

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 3/125 (2%)

Query: 341 YVQTWEGSLAAKFQPNHVSLIKAQAFSKATPPFSLTLQWSSRLEISNFLPEKAVNYTKCS 400
           YV+ WEG+L+ + Q   V + + + +  A+   SL   W   ++I   + +  +N  K  
Sbjct: 556 YVKVWEGNLSGQRQGQPVLITRLEGYRSASASDSLAANWPPTMQIVRLISQDHMN-NKQY 614

Query: 401 LSRPVYYVFLNTLSKSNKLYEHLLSKKLCAKIDFSHQSLILSPTEKKYFFLGSVFPRGTT 460
           + +  + VF   +S+   L + L  KKLCA I    Q+L+LS ++K    +G +FP    
Sbjct: 615 VGKADFLVF-RAMSQHGFLGQ-LQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMV 672

Query: 461 FVEPR 465
             +P+
Sbjct: 673 VFKPQ 677