Miyakogusa Predicted Gene
- Lj0g3v0275509.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0275509.1 Non Chatacterized Hit- tr|A5APB2|A5APB2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,70.59,0.0000000000008,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,Rab3 GTPase-activating protein catalytic subunit;
Rab3-GT,CUFF.18283.1
(376 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 484 e-137
AT5G55060.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 122 5e-28
AT5G55060.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 122 5e-28
>AT5G58510.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:23648287-23654421 REVERSE LENGTH=963
Length = 963
Score = 484 bits (1245), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/386 (62%), Positives = 293/386 (75%), Gaps = 13/386 (3%)
Query: 1 MMLLKSYQSMHAPYTQEAPLMTEDMHEERLQAVEAFGDSFNFSAQLERDILNSDMSSFKA 60
MMLLKS Q +HAP+TQ+ PLMTEDMHEERLQAVEAFGDS N QLE+DIL SDMS+FKA
Sbjct: 581 MMLLKSRQQLHAPFTQDPPLMTEDMHEERLQAVEAFGDSLNVPGQLEKDILLSDMSAFKA 640
Query: 61 ANPDATFEDFIRWHSPGDWEADNDSEVAGXXXXXALDINKSKDDWPPRGRLSKRMSEHGN 120
ANPDA FEDFIRWHSPGDWE+ E SKD+WPPRGRLS+RMS+ GN
Sbjct: 641 ANPDAVFEDFIRWHSPGDWES---FEPKTTEPSAGPSTEGSKDEWPPRGRLSQRMSDQGN 697
Query: 121 LWRKIWDSAPSLPASEQKPLLDPNREGEKVLHYLETLQPHVLLEQMVCTAFRAAADTLSQ 180
LWRK W+ AP+LPA +QKPLLDPNREGEK++HYLET++PH LLEQMVCTAFR +ADTL+Q
Sbjct: 698 LWRKSWNDAPALPADDQKPLLDPNREGEKIVHYLETVRPHQLLEQMVCTAFRGSADTLNQ 757
Query: 181 TSYGELKQMDTKMQQLYLTIAPALRPLQVNRLSADSETIEDLRRLSVVFENVEKLLTLAA 240
T+ G ++QM +K++QLYL + L LQ N L ++T++DL+RL +VFENVEKL+ +AA
Sbjct: 758 TNVGNMRQMTSKLEQLYLIMKFTLGALQRNNLPDKAKTVKDLKRLCMVFENVEKLVAVAA 817
Query: 241 SLHRKLVRAPRLSRDIFSDYYSFYIPTMGTGLSEDIEKEFDK----KQVVKDREREVLSN 296
S+HRK + A RL++ IFSD+Y Y PTMG +++ K + +Q V RER+V+SN
Sbjct: 818 SIHRKFLDASRLAQVIFSDFYGVYAPTMGMSANDEENKSRTEMEVSRQEVSLRERQVVSN 877
Query: 297 MFVPPTANQSWRKVLSMGNLLNGHEPILREIIFSLRDRW-NGNHYAARGGSVSQ-----Q 350
+F PP+ANQSWRKVLSMGNLLNGHEPILREIIFS D NG HYAA + +
Sbjct: 878 LFSPPSANQSWRKVLSMGNLLNGHEPILREIIFSTGDDVNNGIHYAAAADVAATSDRKGE 937
Query: 351 EIETYRMYICGTSNALRVALSVVSCD 376
EIET+RMY+ GTSN LRV LSV SCD
Sbjct: 938 EIETHRMYVSGTSNDLRVGLSVTSCD 963
>AT5G55060.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G58510.1). | chr5:22343079-22346400 FORWARD
LENGTH=569
Length = 569
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 129/282 (45%), Gaps = 61/282 (21%)
Query: 1 MMLLKSYQSMHAPYTQEAPLMTEDMHEERLQAVEAFGDSFNFSAQLERDILNSDMSSFKA 60
+ +L++ + +++P TQE PL+TED+ E + V G +QL SDM +FKA
Sbjct: 277 LTMLETGEPVYSPITQEGPLLTEDLIRETEELVLRTGSMGAGCSQLL-----SDMQAFKA 331
Query: 61 ANPDATFEDFIRWHSPGDWEADNDSEVAGXXXXXALDINKSKDDWPP-RGRLSKRMSEHG 119
ANP EDF+RWHSP DW + N S DD P RG+LS RM + G
Sbjct: 332 ANPGCILEDFVRWHSPPDWTENG---------------NMSGDDSSPVRGQLSTRMQKEG 376
Query: 120 NLWRKIWDSAPSLPASEQKPLLDPNREGEKVLHYLETLQPHVLLEQMVCTAFR------- 172
NLWR++W++A LPA +Q PL D + E +L+YLE + L EQ+ +
Sbjct: 377 NLWRELWETAKPLPAVKQAPLFDEDLAVEGILNYLEDIPAAELFEQLFTSLVSLGFVMVE 436
Query: 173 ---AAADTLSQTSY------------GELKQMDTKMQQLYLTIAPA-LRPLQVNRL---- 212
A D LS+ + G + Q+Y T+ LRP +V R
Sbjct: 437 PVLATNDDLSKLFFECKDYVVAICQGGAWTDKLDDLCQVYETVETMLLRPEEVLRSMKQT 496
Query: 213 ----SADSETIEDLRRLSVVFENVEKLLTLAASLHRKLVRAP 250
S+ SET +RL +F S RK R P
Sbjct: 497 EESPSSGSETKRRFKRLGFIFR---------GSKERKQTRVP 529
>AT5G55060.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins
in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117;
Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes -
33 (source: NCBI BLink). | chr5:22342079-22346400
FORWARD LENGTH=662
Length = 662
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 129/282 (45%), Gaps = 61/282 (21%)
Query: 1 MMLLKSYQSMHAPYTQEAPLMTEDMHEERLQAVEAFGDSFNFSAQLERDILNSDMSSFKA 60
+ +L++ + +++P TQE PL+TED+ E + V G +QL SDM +FKA
Sbjct: 370 LTMLETGEPVYSPITQEGPLLTEDLIRETEELVLRTGSMGAGCSQLL-----SDMQAFKA 424
Query: 61 ANPDATFEDFIRWHSPGDWEADNDSEVAGXXXXXALDINKSKDDWPP-RGRLSKRMSEHG 119
ANP EDF+RWHSP DW + N S DD P RG+LS RM + G
Sbjct: 425 ANPGCILEDFVRWHSPPDWTENG---------------NMSGDDSSPVRGQLSTRMQKEG 469
Query: 120 NLWRKIWDSAPSLPASEQKPLLDPNREGEKVLHYLETLQPHVLLEQMVCTAFR------- 172
NLWR++W++A LPA +Q PL D + E +L+YLE + L EQ+ +
Sbjct: 470 NLWRELWETAKPLPAVKQAPLFDEDLAVEGILNYLEDIPAAELFEQLFTSLVSLGFVMVE 529
Query: 173 ---AAADTLSQTSY------------GELKQMDTKMQQLYLTIAPA-LRPLQVNRL---- 212
A D LS+ + G + Q+Y T+ LRP +V R
Sbjct: 530 PVLATNDDLSKLFFECKDYVVAICQGGAWTDKLDDLCQVYETVETMLLRPEEVLRSMKQT 589
Query: 213 ----SADSETIEDLRRLSVVFENVEKLLTLAASLHRKLVRAP 250
S+ SET +RL +F S RK R P
Sbjct: 590 EESPSSGSETKRRFKRLGFIFR---------GSKERKQTRVP 622