Miyakogusa Predicted Gene

Lj0g3v0275279.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0275279.1 tr|E4MWC7|E4MWC7_THEHA mRNA, clone: RTFL01-07-P23
OS=Thellungiella halophila PE=2 SV=1,30.84,9e-17,seg,NULL,CUFF.18241.1
         (275 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02920.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    77   1e-14
AT4G02920.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...    77   1e-14

>AT4G02920.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr4:1292816-1294670 FORWARD
           LENGTH=418
          Length = 418

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 8/230 (3%)

Query: 4   KLSLMASHGYP-SGLLLHQELGLPGSYMKGCQTLLPSPVAKPDMIRYQSPCLKPNLCEEL 62
           KL  M SHGY   GL L Q+L      +K  ++ L +P A+ ++I    P    NL  EL
Sbjct: 3   KLCFMTSHGYSIPGLGLPQDL-CNTEIIKNSRSHLVNPGARQEII----PASSFNLNTEL 57

Query: 63  TKIRSDCFDCNQFVNADFSTQRPVLLDVQAPCSEALLFGFGIVEKCTKHDQVLNFLMSGT 122
            +        +QFV  D +  +P+L+DV     E+L+  FGI +K  + ++V+ FL+S +
Sbjct: 58  LEPWKPVSSFSQFVEIDSAMMKPLLMDVHETAPESLILSFGIADKFARQEKVMEFLLSQS 117

Query: 123 AETGIGGANXXXXXXXXXXXXXGMDDPQQPLASFIYPYSKFDIQKSLLYFAQDPALSSKI 182
            E    G +                   +P  +    Y   ++ K +L   +D   + + 
Sbjct: 118 EEFKEKGFDMSLLNELMEFESMKSSSQLRPYDTSSVLYLNQELGKPVLDLVRDMMENPEF 177

Query: 183 TVLPDGQITFMGTGI-EMKDLLSVVAESYLTK-TLHKGEKHSVLVPHFIR 230
           +V  +G + F  +   E+ DLLS+ +E  L++ +  K  + S L+PHF R
Sbjct: 178 SVRSNGHVLFSSSSNPELNDLLSIASEFNLSRNSTTKWRQLSPLIPHFQR 227


>AT4G02920.2 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr4:1292816-1294670 FORWARD
           LENGTH=419
          Length = 419

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 7/230 (3%)

Query: 4   KLSLMASHGYP-SGLLLHQELGLPGSYMKGCQTLLPSPVAKPDMIRYQSPCLKPNLCEEL 62
           KL  M SHGY   GL L Q+L       +  ++ L +P A+ ++I    P    NL  EL
Sbjct: 3   KLCFMTSHGYSIPGLGLPQDLCNTEIIKQNSRSHLVNPGARQEII----PASSFNLNTEL 58

Query: 63  TKIRSDCFDCNQFVNADFSTQRPVLLDVQAPCSEALLFGFGIVEKCTKHDQVLNFLMSGT 122
            +        +QFV  D +  +P+L+DV     E+L+  FGI +K  + ++V+ FL+S +
Sbjct: 59  LEPWKPVSSFSQFVEIDSAMMKPLLMDVHETAPESLILSFGIADKFARQEKVMEFLLSQS 118

Query: 123 AETGIGGANXXXXXXXXXXXXXGMDDPQQPLASFIYPYSKFDIQKSLLYFAQDPALSSKI 182
            E    G +                   +P  +    Y   ++ K +L   +D   + + 
Sbjct: 119 EEFKEKGFDMSLLNELMEFESMKSSSQLRPYDTSSVLYLNQELGKPVLDLVRDMMENPEF 178

Query: 183 TVLPDGQITFMGTGI-EMKDLLSVVAESYLTK-TLHKGEKHSVLVPHFIR 230
           +V  +G + F  +   E+ DLLS+ +E  L++ +  K  + S L+PHF R
Sbjct: 179 SVRSNGHVLFSSSSNPELNDLLSIASEFNLSRNSTTKWRQLSPLIPHFQR 228