Miyakogusa Predicted Gene
- Lj0g3v0275259.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0275259.2 Non Chatacterized Hit- tr|B8LQP4|B8LQP4_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,54.23,0.000000000000001,TIFACTORIIB,Transcription factor TFIIB;
TRANSCRIPTION FACTOR IIIB,NULL; TRANSCRIPTION INITIATION
FAC,CUFF.18250.2
(556 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09360.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein |... 421 e-118
AT2G45100.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein |... 329 2e-90
AT2G01280.1 | Symbols: MEE65 | Cyclin/Brf1-like TBP-binding prot... 300 2e-81
AT1G30455.1 | Symbols: | transcription regulators;translation i... 87 3e-17
>AT3G09360.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein |
chr3:2873796-2878432 FORWARD LENGTH=604
Length = 604
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/559 (43%), Positives = 331/559 (59%), Gaps = 30/559 (5%)
Query: 1 MVFCDHCAKNVPGVRVSDGPLCCNECGKVLEEFYFSEEPTFEKTSDGQSKLSGRYVRTIQ 60
MV+C+HC KNVPG+R DG L CN CG++LE F+FS E TF K + GQS+ SG VR++Q
Sbjct: 1 MVWCNHCVKNVPGIRPYDGALACNLCGRILENFHFSTEVTFVKNAAGQSQASGNIVRSVQ 60
Query: 61 SEYSASRQRTLDRAYDEIKYLSYNLGVDD--DNVANQALAFYRIGLEKNFTKGRKSEQVQ 118
S ++SR+R A DE+ L LG+ D D+V A F+ + +E+NFTKGR++E VQ
Sbjct: 61 SGITSSRERRFRIARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQ 120
Query: 119 AACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKLLRLEEHPIVQKPVDPSLFI 178
A+CLY+ RE N LLIDFS+YLR +VY LG+V+LQLC++L L E+ +K VDPS+F+
Sbjct: 121 ASCLYLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFM 180
Query: 179 YKYTISLLNHRN-IHVSETALNIIASMKRDWMQTGRKPSGLCGAALYVSALAHGCKKSKS 237
+++ SLL +N V TA +IIASMKRDW+QTGRKPSG+CGAALY +AL+HG K SK+
Sbjct: 181 DRFSNSLLKGKNNKDVVATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKT 240
Query: 238 EIQRIVHVCEATLTKRLVEFENTESASLTIEELNTMAKELEKNPIQIPNGKLSKCTSKD- 296
+I IVH+CEATLTKRL+EF +T+S +L + EL +E K + K TS
Sbjct: 241 DIVNIVHICEATLTKRLIEFGDTDSGNLNVNELR--ERESHKRSFTM------KPTSNKE 292
Query: 297 -LLCEHKASDAAYFALGLCETCYKDFDKXXXXXXXXXDPPAFQRSERERVAKLHSEESAN 355
+LC H+ D+ F GLCE CYKDF +PPAFQR+E+ER+ K EE+
Sbjct: 293 AVLCMHQ--DSKPFGYGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREENE- 349
Query: 356 KSDDLVRATNGACESRQDKIHVSQPESIGANEQLATENGEHDESHREDDMNAKTAXXXXX 415
G D+ S S+ + +E GE D+ E+ +A T+
Sbjct: 350 ---------GGISSLNHDEQLYSDYCSMSKRGKQCSEKGEKDKDGAEE--HADTSDESDN 398
Query: 416 XXXXXXXXXXGYLHSEQEKHFKKIIWEKMNREYLEEQXXXXXXXXXXXXXXXXXXXXCSE 475
GY+++E+E H+K I W +MN++YLEEQ C E
Sbjct: 399 FSDISDDEVNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPE 458
Query: 476 DLLXXXXXXXXXXXXXXXXRKEMKQKRAEEAKNLGPPQSAAEAAKQMLRTKRLSSKVNYD 535
D RKE +QK+AEEAKN PP +A EA ++ L KRLSS +NYD
Sbjct: 459 D---ARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYD 515
Query: 536 RVQSLFDEPVAPENPKKVR 554
++SLFD ++PK+ +
Sbjct: 516 VLESLFDTSAPEKSPKRSK 534
>AT2G45100.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein |
chr2:18595348-18598088 REVERSE LENGTH=557
Length = 557
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/363 (48%), Positives = 239/363 (65%), Gaps = 6/363 (1%)
Query: 1 MVFCDHCAKNVPGVRVSDGPLCCNECGKVLEEFYFSEEPTFEKTSDGQSKLSGRYVRTIQ 60
MV+C HC KNVPG+R D L C+ CG++LE F FS E TF K + GQS+ SG ++++Q
Sbjct: 1 MVWCKHCGKNVPGIRPYDAALSCDLCGRILENFNFSTEVTFVKNAAGQSQASGNILKSVQ 60
Query: 61 SEYSASRQRTLDRAYDEIKYLSYNLGVDDD--NVANQALAFYRIGLEKNFTKGRKSEQVQ 118
S S+SR+R + +A DE+ L LG+ DD +V A F+RI L+ NFTKGR E V
Sbjct: 61 SGMSSSRERIIRKATDELMNLRDALGIGDDRDDVIVMASNFFRIALDHNFTKGRSKELVF 120
Query: 119 AACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKLLRLEEHPIVQKPVDPSLFI 178
++CLY+ R+ LLIDFS+YLR +VY LG+V+LQLC +L + E+ +K VDPS+FI
Sbjct: 121 SSCLYLTCRQFKLAVLLIDFSSYLRVSVYDLGSVYLQLCDMLYITENHNYEKLVDPSIFI 180
Query: 179 YKYTISLL-NHRNIHVSETALNIIASMKRDWMQTGRKPSGLCGAALYVSALAHGCKKSKS 237
+++ LL N + TA +IIASMKRDWMQTGRKPSG+CGAALY +AL+HG K SK+
Sbjct: 181 PRFSNMLLKGAHNNKLVLTATHIIASMKRDWMQTGRKPSGICGAALYTAALSHGIKCSKT 240
Query: 238 EIQRIVHVCEATLTKRLVEFENTESASLTIEELNTMAKELEKNPIQIPNGKLSKCTSKDL 297
+I IVH+CEATLTKRL+EF +TE+ASLT +EL+ +E E ++ K + +
Sbjct: 241 DIVNIVHICEATLTKRLIEFGDTEAASLTADELSKTEREKETAALR-SKRKPNFYKEGVV 299
Query: 298 LCEHKASDAAYFALGLCETCYKDFDKXXXXXXXXXDPPAFQRSERERVAKLHSEESANKS 357
LC H+ D GLCE+CY +F DPPAFQR+E+ER+ + S E +K
Sbjct: 300 LCMHQ--DCKPVDYGLCESCYDEFMTVSGGLEGGSDPPAFQRAEKERMEEKASSEENDKQ 357
Query: 358 DDL 360
+L
Sbjct: 358 VNL 360
>AT2G01280.1 | Symbols: MEE65 | Cyclin/Brf1-like TBP-binding protein
| chr2:145676-148784 FORWARD LENGTH=548
Length = 548
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 196/526 (37%), Positives = 287/526 (54%), Gaps = 62/526 (11%)
Query: 1 MVFCDHCAKNVPGVRVSDGPLCCNECGKVLEEFYFSEEPTFEKTSDGQSKLSGRYVRTIQ 60
MV+C HCAKNVP +R DG L C+ CG++LE F FS + TF K + GQ V ++
Sbjct: 1 MVWCKHCAKNVPKIRPFDGGLACDLCGRILENFNFSTDVTFVKNAAGQV---CNIVTSVG 57
Query: 61 SEYSASRQRTLDRAYDEIKYLSYNLGVDD--DNVANQALAFYRIGLEKNFTKGRKSEQVQ 118
+ S R+R +A DE++ L LG+ D D+V + A FY +++NFTKGR++E VQ
Sbjct: 58 NSSSRDRRRR--KAIDELRNLKDALGIGDERDDVVDMAAVFYEAAMDQNFTKGRRAELVQ 115
Query: 119 AACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKLLRLEEHPIVQKPVDPSLFI 178
++CLY+A +YLR +VY LG+V+LQLC++L L ++ ++ VDPS+FI
Sbjct: 116 SSCLYLA-------------CSYLRVSVYELGSVYLQLCEMLYLVQNKNYEELVDPSIFI 162
Query: 179 YKYTISLL---NHRNIHVSETALNIIASMKRDWMQTGRKPSGLCGAALYVSALAHGCKKS 235
++T SLL + + V+ TA NII+SMKRDW+QTGRKPSG+CGAA+Y++AL+HG S
Sbjct: 163 PRFTNSLLKGAHAKAKDVANTAKNIISSMKRDWIQTGRKPSGICGAAIYMAALSHGIMYS 222
Query: 236 KSEIQRIVHVCEATLTKRLVEFENTESASLTIEELNTMAKELEKNPIQI-PNGKLSKCTS 294
+++I ++VH+CEAT+TKRL EF NTE+ SLT++EL+ + L K PN +
Sbjct: 223 RADIAKVVHMCEATITKRLNEFANTEAGSLTVDELDESEEILRKETFTPRPN------SD 276
Query: 295 KDLL-CEHKASDAAYFALGLCETCYKDFDKXXXXXXXXXDPPAFQRSERERVAKLHSEES 353
K ++ C+HK D F GLC++C+ DF DPPA+QR+E+ER+ K EE+
Sbjct: 277 KGVVNCKHK--DLKRFGYGLCKSCHDDFIIISGGVVGGSDPPAYQRAEKERMEKAAREEN 334
Query: 354 ANKSDDLVRATNGACESRQDKIHVSQPESIGANEQLATENGEHDESHREDDMNAKTAXXX 413
+L + ++++VS+ + +E GE + E +A+ +
Sbjct: 335 EGGIGNL---------NHDEQVNVSK------RAKKCSEKGEGETYGGE--RHAEYSDES 377
Query: 414 XXXXXXXXXXXXGYLHSEQEKHFKKIIWEKMNREYLEEQXXXXXXXXXXXXXXXXXXXXC 473
L E E K W N++YLEEQ C
Sbjct: 378 DICSDDDDSEVEHVLLGEDETRLKTTAWNLQNKDYLEEQ---------AEKEAALKAANC 428
Query: 474 SEDLLXXXXXXXXXXXXXXXXRKEMKQKRAEEAKNLGPPQSAAEAA 519
ED RKE ++KRAEEAKN P +A EA+
Sbjct: 429 PED---ARNLVEASKAAVANSRKEKRRKRAEEAKNAPPSATATEAS 471
>AT1G30455.1 | Symbols: | transcription regulators;translation
initiation factors;zinc ion binding;transcription
activators | chr1:10769722-10770775 FORWARD LENGTH=254
Length = 254
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 159 LLRLEEHPIVQKPVDPSLFIYKYTISLL-NHRNIHVSETALNIIASMKRDWMQTGRKPSG 217
+L L E+ + VDPS FI +++ LL N V ETA +IIASMK +WMQTGRKPSG
Sbjct: 1 MLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQVVETATHIIASMKSNWMQTGRKPSG 60
Query: 218 LCGAALYVSALAHG 231
+CGAALY +AL+HG
Sbjct: 61 ICGAALYTAALSHG 74