Miyakogusa Predicted Gene

Lj0g3v0275219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0275219.1 Non Chatacterized Hit- tr|A5C9T2|A5C9T2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,34.24,1e-18,seg,NULL,CUFF.18238.1
         (234 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53110.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    74   7e-14
AT2G25410.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    72   4e-13
AT2G46495.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    68   5e-12
AT5G36001.2 | Symbols:  | RING/U-box superfamily protein | chr5:...    54   1e-07
AT5G36001.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    53   2e-07
AT2G46494.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    50   1e-06

>AT5G53110.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:21529022-21533008 FORWARD LENGTH=382
          Length = 382

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 8/105 (7%)

Query: 37  CSSHAPTIQYPFRLQSTQPQKCG-ETGFDLSCSEN--HKTMLELPLSVKLAVNKIDYKSH 93
           C    P I++PFRL+  Q   CG + GFDL+C  N  ++T + LP S    V +IDY + 
Sbjct: 35  CRRDGPIIRFPFRLKHQQSHSCGYDKGFDLTCDINAGNRTTITLPFSGNFTVEEIDYAAQ 94

Query: 94  TVHVTVPDGLCLPKLLSHLNMSATPFHFLENPFYHANYTLFNCSS 138
            + +  P+  CLP+ +  LN+++TPF  +    Y   +T FNC +
Sbjct: 95  EIWINDPNN-CLPQRILQLNLNSTPFSGV----YMRQFTFFNCPT 134


>AT2G25410.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:10814470-10815917 FORWARD LENGTH=377
          Length = 377

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 5/111 (4%)

Query: 26  ASADIGCEKTRCSSHAPTIQYPFRLQSTQPQKCGETGFDLSCSENHKTMLELPLSVKLAV 85
           AS    C    CS  +   ++PF L S QP+ CG +GF+L C ++  T L+LP S    V
Sbjct: 23  ASEQKPCYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKDDANTTLKLPKSEPFLV 82

Query: 86  NKIDYKSHTVHVTVPDGLCLPKLLSHLNMSATPFHFLENPFYHANYTLFNC 136
            +IDY++  + +  P+  CL + L + + S +PF FL +     NYT   C
Sbjct: 83  KEIDYETQRIRLNDPEN-CLARRLLNFDPSGSPFSFLRS----RNYTFLIC 128


>AT2G46495.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:19084134-19085704 REVERSE LENGTH=372
          Length = 372

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 32  CEKTRCSSHAPTIQYPFRLQSTQPQKCGETGFDLSCSENHKTMLELPLSVKLAVNKIDYK 91
           C  + C      +++PF L S QP+ CG  GF+L C+ + KT L+LP S    V +IDY 
Sbjct: 26  CSSSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQCTASPKTALKLPNSGTFLVREIDYL 85

Query: 92  SHTVHVTVPDGLCLPKLLSHLNMSATPFHFLENPFYHANYTLFNC 136
           S  + +  P+  CL + L   ++S +PF  L    Y  +YT  +C
Sbjct: 86  SQQIRLYDPEN-CLARKLLTFDISRSPFSAL----YLVSYTFLSC 125


>AT5G36001.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:14142050-14142715 FORWARD LENGTH=221
          Length = 221

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%)

Query: 26  ASADIGCEKTRCSSHAPTIQYPFRLQSTQPQKCGETGFDLSCSENHKTMLELPLSVKLAV 85
           AS    C  + C  +   + +PF L   Q   C   GF+L C    +T L+LP S +  V
Sbjct: 24  ASKPKRCYSSSCGGNNLDVSFPFWLSPEQSSSCDYPGFNLHC----ETALKLPNSRRFLV 79

Query: 86  NKIDYKSHTVHVTVPDGLCLPKLLSHLNMSATPFHFLENPFYHANYTLFNCSSMNT 141
              D KS  +H+  PD  CL + L   + S +PF    +P +  NYT  +C + N 
Sbjct: 80  Q--DIKSQRIHLRDPDN-CLARRLLSFDASMSPF----SPLHLVNYTFLSCHNENV 128


>AT5G36001.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:14142050-14143143 FORWARD LENGTH=322
          Length = 322

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%)

Query: 26  ASADIGCEKTRCSSHAPTIQYPFRLQSTQPQKCGETGFDLSCSENHKTMLELPLSVKLAV 85
           AS    C  + C  +   + +PF L   Q   C   GF+L C    +T L+LP S +  V
Sbjct: 24  ASKPKRCYSSSCGGNNLDVSFPFWLSPEQSSSCDYPGFNLHC----ETALKLPNSRRFLV 79

Query: 86  NKIDYKSHTVHVTVPDGLCLPKLLSHLNMSATPFHFLENPFYHANYTLFNCSSMNT 141
              D KS  +H+  PD  CL + L   + S +PF    +P +  NYT  +C + N 
Sbjct: 80  Q--DIKSQRIHLRDPDN-CLARRLLSFDASMSPF----SPLHLVNYTFLSCHNENV 128


>AT2G46494.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:19082344-19083811 REVERSE LENGTH=362
          Length = 362

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 14/101 (13%)

Query: 36  RCSSHAPTIQYPFRLQSTQPQKCGETGFDLSCSENHKTMLELPLSVKLAVNKIDYKSHTV 95
           RC      I++PF         C    F+L C+  + T+L+LP+S    V  IDY+   +
Sbjct: 38  RCGPLEVPIRFPF---------CDHPLFNLLCTNLNNTVLQLPMSGTFFVQYIDYRKQQI 88

Query: 96  HVTVPDGLCLPKLLSHLNMSATPFHFLENPFYHANYTLFNC 136
           ++  P+  CL K L   N+S +PF    +P +   YT   C
Sbjct: 89  YINDPEN-CLAKRLLTFNISGSPF----SPRFDTLYTFLTC 124