Miyakogusa Predicted Gene

Lj0g3v0275179.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0275179.1 Non Chatacterized Hit- tr|D8S9W1|D8S9W1_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,62.86,3e-19,DDHD,DDHD; SEC23 INTERACTING PROTEIN
P125-RELATED,NULL; SEC-23 INTERACTING PROTEIN P125,NULL;
seg,NU,CUFF.18239.1
         (138 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31480.1 | Symbols: SGR2 | shoot gravitropism 2 (SGR2) | chr1...   144   2e-35

>AT1G31480.1 | Symbols: SGR2 | shoot gravitropism 2 (SGR2) |
           chr1:11266225-11271527 FORWARD LENGTH=933
          Length = 933

 Score =  144 bits (362), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/116 (59%), Positives = 88/116 (75%), Gaps = 4/116 (3%)

Query: 21  MLERLTGSKTGRIDHMLQDKTFEHSYLQAVGAHTNYWRDHDTALFILRHLYRDIPEEPNL 80
           M+ERLTG++ GRIDHMLQ+KTFEH YLQA+GAHTNYWRD DTALFI++HLYR++P+ PN 
Sbjct: 817 MIERLTGTRDGRIDHMLQEKTFEHPYLQAIGAHTNYWRDQDTALFIIKHLYRELPDGPNS 876

Query: 81  SAVHSGG--SPKYQSSSAGWYDQR--DSVEEDLPLTFSDKAMVRNFSSKTRKILHK 132
               + G  SPK  S    W D+R  D  +E+LPLTFSDK + R+FS++ +K L K
Sbjct: 877 PTESTEGDDSPKDSSRPHSWIDRREADYDDEELPLTFSDKQITRSFSAEAKKYLKK 932