Miyakogusa Predicted Gene
- Lj0g3v0275139.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0275139.1 Non Chatacterized Hit- tr|I1MZC4|I1MZC4_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,58.54,2e-17,seg,NULL; XH,Uncharacterised domain XH; TRANSCRIPTION
FACTOR X1-LIKE,NULL; RIBONUCLEASE P PROTEIN SU,gene.g21395.t1.1
(307 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12550.2 | Symbols: | XH/XS domain-containing protein | chr3... 75 5e-14
AT3G12550.1 | Symbols: | XH/XS domain-containing protein | chr3... 75 5e-14
AT1G13790.1 | Symbols: | XH/XS domain-containing protein | chr1... 74 1e-13
AT3G48670.2 | Symbols: IDN2, RDM12 | XH/XS domain-containing pro... 74 1e-13
AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing pro... 74 1e-13
AT4G01780.1 | Symbols: | XH/XS domain-containing protein | chr4... 72 7e-13
AT4G00380.1 | Symbols: | XH/XS domain-containing protein | chr4... 62 4e-10
AT1G15910.1 | Symbols: | XH/XS domain-containing protein | chr1... 61 1e-09
AT1G80790.1 | Symbols: | XH/XS domain-containing protein | chr1... 60 2e-09
AT3G29375.1 | Symbols: | XH domain-containing protein | chr3:11... 56 2e-08
AT5G59390.1 | Symbols: | XH/XS domain-containing protein | chr5... 54 2e-07
AT4G01180.1 | Symbols: | XH/XS domain-containing protein | chr4... 50 2e-06
>AT3G12550.2 | Symbols: | XH/XS domain-containing protein |
chr3:3978669-3981372 FORWARD LENGTH=638
Length = 638
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 49/74 (66%)
Query: 206 IEEEIVCDDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLE 265
I E I DDEKL+ L+ E+ +A AV A E+N++NPSGR++ SELWN RKATLE
Sbjct: 561 IVEVIDEDDEKLRTLKNELGDDAYQAVANALLEINEYNPSGRYISSELWNFREDRKATLE 620
Query: 266 EGVEFLLSQWKTKK 279
EGV LL QW K
Sbjct: 621 EGVNSLLEQWNQAK 634
>AT3G12550.1 | Symbols: | XH/XS domain-containing protein |
chr3:3978669-3981372 FORWARD LENGTH=638
Length = 638
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 49/74 (66%)
Query: 206 IEEEIVCDDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLE 265
I E I DDEKL+ L+ E+ +A AV A E+N++NPSGR++ SELWN RKATLE
Sbjct: 561 IVEVIDEDDEKLRTLKNELGDDAYQAVANALLEINEYNPSGRYISSELWNFREDRKATLE 620
Query: 266 EGVEFLLSQWKTKK 279
EGV LL QW K
Sbjct: 621 EGVNSLLEQWNQAK 634
>AT1G13790.1 | Symbols: | XH/XS domain-containing protein |
chr1:4727438-4730229 FORWARD LENGTH=736
Length = 736
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 52/71 (73%)
Query: 205 MIEEEIVCDDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATL 264
+ +EE+ +DEKL++LRKE+ E AV QA KE N++N SGR++V ELWN RKA++
Sbjct: 656 IAKEELNEEDEKLQELRKELGEEVYAAVTQALKERNEYNGSGRYIVPELWNFKQNRKASI 715
Query: 265 EEGVEFLLSQW 275
+EGV +L++ W
Sbjct: 716 KEGVVYLVNSW 726
>AT3G48670.2 | Symbols: IDN2, RDM12 | XH/XS domain-containing
protein | chr3:18031240-18033615 FORWARD LENGTH=647
Length = 647
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 207 EEEIVCD-DEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLE 265
E E++ D DEKL++L+ ++ AV +A E+N++NPSGR++ +ELWN +KATLE
Sbjct: 568 EVEVIDDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKADKKATLE 627
Query: 266 EGVEFLLSQWKTKKRK 281
EGV LL QW+ KRK
Sbjct: 628 EGVTCLLDQWEKAKRK 643
>AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing
protein | chr3:18031240-18033615 FORWARD LENGTH=647
Length = 647
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 207 EEEIVCD-DEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLE 265
E E++ D DEKL++L+ ++ AV +A E+N++NPSGR++ +ELWN +KATLE
Sbjct: 568 EVEVIDDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKADKKATLE 627
Query: 266 EGVEFLLSQWKTKKRK 281
EGV LL QW+ KRK
Sbjct: 628 EGVTCLLDQWEKAKRK 643
>AT4G01780.1 | Symbols: | XH/XS domain-containing protein |
chr4:767310-769246 FORWARD LENGTH=472
Length = 472
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 207 EEEIVCD-DEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLE 265
E E++ D DEKL++L+ ++ AV +A E+N++NPSGR++ +ELWN ++ATLE
Sbjct: 393 EVEVIDDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNFKEDKRATLE 452
Query: 266 EGVEFLLSQWKTKKRK 281
EGV LL QW+ KRK
Sbjct: 453 EGVTCLLDQWEKAKRK 468
>AT4G00380.1 | Symbols: | XH/XS domain-containing protein |
chr4:167959-170448 FORWARD LENGTH=635
Length = 635
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 208 EEIVC-DDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEE 266
EE+V DDE+LK+L++E E AV A EMN++N SGR+ SELWN RKATL+E
Sbjct: 559 EEVVDEDDEQLKKLKREWGKEVHNAVKAALVEMNEYNASGRYPTSELWNFKEGRKATLKE 618
Query: 267 GVEFLLSQWKTKKRK 281
+ F+ + K KRK
Sbjct: 619 VITFISTDIKNLKRK 633
>AT1G15910.1 | Symbols: | XH/XS domain-containing protein |
chr1:5465951-5468723 FORWARD LENGTH=634
Length = 634
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 208 EEIVC-DDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEE 266
EE+V DDE+LK+L++E E AV A EMN++N SGR+ ELWN RKATL+E
Sbjct: 558 EEVVDEDDEQLKKLKREWGKEVHNAVKTALVEMNEYNASGRYTTPELWNFKEGRKATLKE 617
Query: 267 GVEFLLSQWKTKKRK 281
+ F+ + K KRK
Sbjct: 618 VITFISNDIKILKRK 632
>AT1G80790.1 | Symbols: | XH/XS domain-containing protein |
chr1:30360280-30362856 FORWARD LENGTH=634
Length = 634
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 217 LKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEEGVEFLLSQWK 276
+K+LR+E E + AV A +E+N+ NPSGR+ V ELWN RKATL+E ++++ Q K
Sbjct: 568 IKKLREEWGEEVKNAVKTALEELNEFNPSGRYSVPELWNSKQGRKATLKEVIDYITQQVK 627
Query: 277 TKKRK 281
T KR+
Sbjct: 628 TLKRR 632
>AT3G29375.1 | Symbols: | XH domain-containing protein |
chr3:11280151-11281829 FORWARD LENGTH=355
Length = 355
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%)
Query: 205 MIEEEIVCDDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATL 264
+++E + +DEKLK LR+E E AV A +E+N+ NPSGR VV LWN R ATL
Sbjct: 272 IVKEVVDEEDEKLKNLREEWGEEVMNAVKTALEEVNEFNPSGRHVVPTLWNSEQGRVATL 331
Query: 265 EEGVEFLLSQWKTKKRK 281
E + + + KT KRK
Sbjct: 332 REVIAHMTHEIKTLKRK 348
>AT5G59390.1 | Symbols: | XH/XS domain-containing protein |
chr5:23954934-23957151 FORWARD LENGTH=561
Length = 561
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 196 DELQKARKRMIEEEIVCDDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWN 255
DE KR+++E +DEKL+ L+ + E VV+ E+ +HN SG +V+ ELWN
Sbjct: 471 DESDGTPKRVVDE----NDEKLRTLKNQYGEEVYNEVVRTKLEIEEHNASGSYVILELWN 526
Query: 256 HGMKRKATLEEGVEFLL 272
+ RKAT+EE + +L
Sbjct: 527 YEENRKATMEEATDVML 543
>AT4G01180.1 | Symbols: | XH/XS domain-containing protein |
chr4:501287-503394 REVERSE LENGTH=554
Length = 554
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 213 DDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEEGVEFLL 272
+DEKL+ L+ + E VV+A EM +HN SG + ELWN+ RKAT+EE + +L
Sbjct: 479 NDEKLRMLKNQYGEEVYSEVVRAKLEMEEHNASGSYETEELWNYEENRKATIEEITDVML 538