Miyakogusa Predicted Gene

Lj0g3v0275109.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0275109.1 Non Chatacterized Hit- tr|E9CB76|E9CB76_CAPO3
Putative uncharacterized protein OS=Capsaspora
owczarz,26.64,5e-17,RIBONUCLEASE P/MRP SUBUNIT,NULL; POP1,Ribonuclease
P/MRP, subunit POP1,CUFF.18236.1
         (342 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47300.2 | Symbols:  | ribonuclease Ps | chr2:19418733-194220...   333   7e-92
AT2G47300.3 | Symbols:  | ribonuclease Ps | chr2:19419333-194220...   128   5e-30

>AT2G47300.2 | Symbols:  | ribonuclease Ps | chr2:19418733-19422076
           FORWARD LENGTH=826
          Length = 826

 Score =  333 bits (855), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 176/333 (52%), Positives = 228/333 (68%), Gaps = 34/333 (10%)

Query: 15  IPPRKINVQKYAKSRGPELLSLQSIVENRLNNNYSSQRNKRRRTTAFDSQIARKGGNRKR 74
           + PRKINVQK++++R PEL SL SIV  RLN ++ S+RNKRRRT ++++Q A+K  N KR
Sbjct: 19  LAPRKINVQKFSEARAPELESLHSIVSERLNKDFRSKRNKRRRTNSYNNQPAKKR-NIKR 77

Query: 75  QK----LGAVDKAHDESVLEKDQLKKLPRHIRRRYELKMNPENGFCTSGDGTKRLRTHVW 130
           QK    +G V           D   K+ R ++RR ELK NPE GFCTSGDGTKRLRTHVW
Sbjct: 78  QKSQSLIGQVSGG--------DHEVKITRRVKRRMELKGNPETGFCTSGDGTKRLRTHVW 129

Query: 131 HAKRFAMTKLWGYNLPLGFQGRGKGSRAVLKRFKEGVLLHDSSYYTAVQLEGPEDSLVSV 190
           HAKRF MTKLWG++LPLG  GRG+GSR VLK+ ++GVL+HD+SY+ AVQLEGPE SL+S+
Sbjct: 130 HAKRFTMTKLWGFHLPLGLHGRGRGSRDVLKQSRQGVLVHDASYHIAVQLEGPEGSLLSI 189

Query: 191 LRMVLLPSLETETPGNHDFSVLSGITYGTAMLYQVGAPVSQPIAPVTYIWRPT-FPQNKS 249
           L M+L PS  + +    D S+L+G +Y  AMLY V  PVSQ IAPVTY+WRP+  P+ ++
Sbjct: 190 LNMLLEPSPSSHSKEVFD-SILTGGSYENAMLYHVEPPVSQAIAPVTYMWRPSKIPKRRN 248

Query: 250 TELDGRNHHTSSSQHDINDNSSNHDADLCEKSDVMKCGSSFRHIWVWIHASAFEEGYDSL 309
            E  G    T     D+  +  +H+               FR +WVWIHAS+F EGY  L
Sbjct: 249 EEKGGDGIGT-----DLPVSDKDHE--------------DFRKLWVWIHASSFSEGYAIL 289

Query: 310 KFACQKEMEKSGVLINCLSLEGQLGKLELMGSQ 342
           K ACQK+M ++GV ++C SLEGQL KLE+ GS+
Sbjct: 290 KVACQKQMNETGVSVDCFSLEGQLAKLEIFGSK 322


>AT2G47300.3 | Symbols:  | ribonuclease Ps | chr2:19419333-19422076
           FORWARD LENGTH=659
          Length = 659

 Score =  128 bits (322), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 101/166 (60%), Gaps = 24/166 (14%)

Query: 178 VQLEGPEDSLVSVLRMVLLPSLETETPGNHDFSVLSGITYGTAMLYQVGAPVSQPIAPVT 237
           VQ +G   SL+S+L M+L PS  + +    D S+L+G +Y  AMLY V  PVSQ IAPVT
Sbjct: 13  VQRQG---SLLSILNMLLEPSPSSHSKEVFD-SILTGGSYENAMLYHVEPPVSQAIAPVT 68

Query: 238 YIWRPT-FPQNKSTELDGRNHHTSSSQHDINDNSSNHDADLCEKSDVMKCGSSFRHIWVW 296
           Y+WRP+  P+ ++ E  G    T     D+  +  +H+               FR +WVW
Sbjct: 69  YMWRPSKIPKRRNEEKGGDGIGT-----DLPVSDKDHE--------------DFRKLWVW 109

Query: 297 IHASAFEEGYDSLKFACQKEMEKSGVLINCLSLEGQLGKLELMGSQ 342
           IHAS+F EGY  LK ACQK+M ++GV ++C SLEGQL KLE+ GS+
Sbjct: 110 IHASSFSEGYAILKVACQKQMNETGVSVDCFSLEGQLAKLEIFGSK 155