Miyakogusa Predicted Gene

Lj0g3v0274949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0274949.1 tr|B9HPB5|B9HPB5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_650211 PE=4
SV=1,43.75,7e-19,seg,NULL,CUFF.18220.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55646.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    57   4e-09

>AT3G55646.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT2G39855.2); Has 35333 Blast hits to
           34131 proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr3:20645087-20646148 FORWARD LENGTH=146
          Length = 146

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 59/156 (37%), Gaps = 12/156 (7%)

Query: 1   MDNNNNRKKVXXXXXXXXXPTNFDHLFGPKDPXXXXXXXXXXFGSMFPPPST--AGRRDP 58
           MD N N+KK+          ++FDH+FGP+            F S+FPPPS    GR+  
Sbjct: 1   MDKNKNKKKIVSASSSSSSLSSFDHIFGPRVSSSSSSSATGLFKSIFPPPSADQLGRQVD 60

Query: 59  IKQDMGTKNYGAPGKXXXXXXXXXXXXXXXXYQNETVEPXXXXXXXXXGGQENYSPRTRT 118
                G   Y +P                  Y  ET  P         GGQE YS  T T
Sbjct: 61  FASQGGHVKYQSP---NAKGERSNKKEKKSYYNEETEPPCHLSSSLYYGGQETYSSTTTT 117

Query: 119 TESQQNFXXXXXXXXXXXXXXXXASRGNWWQGSLYY 154
           T                      ASRGNWW+GSLYY
Sbjct: 118 THDTYK-------KDGEEGDSKRASRGNWWEGSLYY 146