Miyakogusa Predicted Gene

Lj0g3v0274089.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0274089.1 tr|C1MLL0|C1MLL0_MICPC WD40 repeat
domain-containing protein OS=Micromonas pusilla (strain
CCMP1545),21.02,7e-17,SUBFAMILY NOT NAMED,NULL; WD REPEAT
PROTEIN,NULL; no description,WD40/YVTN repeat-like-containing
do,CUFF.18181.1
         (590 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01860.2 | Symbols:  | Transducin family protein / WD-40 repe...   633   0.0  
AT4G01860.1 | Symbols:  | Transducin family protein / WD-40 repe...   633   0.0  

>AT4G01860.2 | Symbols:  | Transducin family protein / WD-40 repeat
           family protein | chr4:801713-808018 REVERSE LENGTH=1308
          Length = 1308

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/582 (53%), Positives = 411/582 (70%), Gaps = 18/582 (3%)

Query: 2   FSIGIPNVVEHIGLMDSKSEYVRCLRFSCQDSLYVATNHGYLYHAKLCDTGGAQWNQLVQ 61
           FS  +PN  +H GL DSKSEYVRCL+F+ +D++YVATNHG LYHA+L  +G  +W +LV+
Sbjct: 371 FSTCLPNSTKHTGLTDSKSEYVRCLQFTQEDTIYVATNHGCLYHARLLSSGNVRWTELVR 430

Query: 62  VSNRTPIICMDLLSKDSFKLDYGAEDWIAIGDGKGNMTVLGVSNDGCTPSVRLSFTWKAE 121
           +    PII MD++S    +     +DW+A+GDGKGNMT++ V  D   P   L+ +WKA 
Sbjct: 431 IPEEGPIITMDVMSGGKVRESCALDDWVALGDGKGNMTIVRVIGDMYNPHAGLNQSWKAS 490

Query: 122 IERQLLGTYWCKSLGCRYIFTADPRGRLKLWRLPDPSESDLESFMRCNSVSQIAEFISSY 181
            ERQLLG +WCKSLG R++F+ +PRG LKLW+L    ES  E++     VS +AEF S +
Sbjct: 491 PERQLLGAFWCKSLGYRFVFSCNPRGLLKLWKLSGSLESAAETY----DVSLLAEFSSGF 546

Query: 182 GMRIMCLDICLEEEVLACGDVRGNMLIFPLLKDLVLGTSVAPEMKIPPVNHFKGVHGISS 241
           G RIMC+D  +E+EV+ CGD+RGN+ +FPL KD++ G SV+ E+KIP + +FKG HGIS+
Sbjct: 547 GKRIMCVDASVEDEVILCGDLRGNITLFPLTKDMLHGVSVSSELKIPSLKYFKGAHGIST 606

Query: 242 VSSIFVTRIGYNQIEICSTGADGCICYLEYDREMQNLQFTGMKQVKELTLIEYV--SMDN 299
           VSS+ V R+  N+ EICSTGADGCICY EYDREMQ L+F G+KQ+KEL L++ V   +  
Sbjct: 607 VSSLSVARLTSNKAEICSTGADGCICYFEYDREMQTLEFMGLKQLKELNLVQSVCQGVQF 666

Query: 300 ALDTLSGSYAAGFASVDFIIWNLVNENMVVKIPCGGWRRPHSYYLGDVPEMKNCFAYVKD 359
           + D  +  YAAGFAS DFI+WNL  E  V +I CGGWRRPHS+YLG++PE +NCFAYVKD
Sbjct: 667 SEDHPNNDYAAGFASTDFILWNLTAETKVTQISCGGWRRPHSFYLGEIPEWQNCFAYVKD 726

Query: 360 EMIHIHRHWLHDRDKKIYPQSLHMQFHGREIHSLCFISEDMLLR-DNYKHALVSKSSWIA 418
           ++IHIHRHW+  +  K++P +LH QFHGRE+HSLCFIS D     D+ +  +  +SSWIA
Sbjct: 727 DVIHIHRHWVGGQKTKVFPLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIA 786

Query: 419 TGCEDGTVRLTWYSSGIENWSMSKLLGEHVGGSAVRSICCVSKLHTFSSDTTDVPNGRSE 478
           TGCEDG+VRL+ Y+S   NWS S+LLGEHVGGSAVRS+CCVS +H  SSD  ++P+   +
Sbjct: 787 TGCEDGSVRLSRYASEFGNWSTSELLGEHVGGSAVRSVCCVSNMHMMSSDVPNLPDMCDQ 846

Query: 479 VNAADKDKDSPTLLISVGAKRVITSWLLKTTSRDSKNDF-LTDHQYNSKGVDDKFVSSLS 537
             A D D +SP LLISVGAKRV+TSWLL+      K +  ++D+ +N         SS  
Sbjct: 847 DYAVD-DCESPRLLISVGAKRVVTSWLLRNGRHKKKGESCISDNGHNR-------ASSEV 898

Query: 538 SSMTFQWLSTDMPAKYSTTYKYPENNVKKVVGVAENVSNTKT 579
           S +TFQWL+TDMP KY    K  ++   K+ GV E+ S   T
Sbjct: 899 SPVTFQWLATDMPTKYRPCGKIEKS--PKLEGVEEDTSANVT 938


>AT4G01860.1 | Symbols:  | Transducin family protein / WD-40 repeat
           family protein | chr4:801713-808018 REVERSE LENGTH=1308
          Length = 1308

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/582 (53%), Positives = 411/582 (70%), Gaps = 18/582 (3%)

Query: 2   FSIGIPNVVEHIGLMDSKSEYVRCLRFSCQDSLYVATNHGYLYHAKLCDTGGAQWNQLVQ 61
           FS  +PN  +H GL DSKSEYVRCL+F+ +D++YVATNHG LYHA+L  +G  +W +LV+
Sbjct: 371 FSTCLPNSTKHTGLTDSKSEYVRCLQFTQEDTIYVATNHGCLYHARLLSSGNVRWTELVR 430

Query: 62  VSNRTPIICMDLLSKDSFKLDYGAEDWIAIGDGKGNMTVLGVSNDGCTPSVRLSFTWKAE 121
           +    PII MD++S    +     +DW+A+GDGKGNMT++ V  D   P   L+ +WKA 
Sbjct: 431 IPEEGPIITMDVMSGGKVRESCALDDWVALGDGKGNMTIVRVIGDMYNPHAGLNQSWKAS 490

Query: 122 IERQLLGTYWCKSLGCRYIFTADPRGRLKLWRLPDPSESDLESFMRCNSVSQIAEFISSY 181
            ERQLLG +WCKSLG R++F+ +PRG LKLW+L    ES  E++     VS +AEF S +
Sbjct: 491 PERQLLGAFWCKSLGYRFVFSCNPRGLLKLWKLSGSLESAAETY----DVSLLAEFSSGF 546

Query: 182 GMRIMCLDICLEEEVLACGDVRGNMLIFPLLKDLVLGTSVAPEMKIPPVNHFKGVHGISS 241
           G RIMC+D  +E+EV+ CGD+RGN+ +FPL KD++ G SV+ E+KIP + +FKG HGIS+
Sbjct: 547 GKRIMCVDASVEDEVILCGDLRGNITLFPLTKDMLHGVSVSSELKIPSLKYFKGAHGIST 606

Query: 242 VSSIFVTRIGYNQIEICSTGADGCICYLEYDREMQNLQFTGMKQVKELTLIEYV--SMDN 299
           VSS+ V R+  N+ EICSTGADGCICY EYDREMQ L+F G+KQ+KEL L++ V   +  
Sbjct: 607 VSSLSVARLTSNKAEICSTGADGCICYFEYDREMQTLEFMGLKQLKELNLVQSVCQGVQF 666

Query: 300 ALDTLSGSYAAGFASVDFIIWNLVNENMVVKIPCGGWRRPHSYYLGDVPEMKNCFAYVKD 359
           + D  +  YAAGFAS DFI+WNL  E  V +I CGGWRRPHS+YLG++PE +NCFAYVKD
Sbjct: 667 SEDHPNNDYAAGFASTDFILWNLTAETKVTQISCGGWRRPHSFYLGEIPEWQNCFAYVKD 726

Query: 360 EMIHIHRHWLHDRDKKIYPQSLHMQFHGREIHSLCFISEDMLLR-DNYKHALVSKSSWIA 418
           ++IHIHRHW+  +  K++P +LH QFHGRE+HSLCFIS D     D+ +  +  +SSWIA
Sbjct: 727 DVIHIHRHWVGGQKTKVFPLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIA 786

Query: 419 TGCEDGTVRLTWYSSGIENWSMSKLLGEHVGGSAVRSICCVSKLHTFSSDTTDVPNGRSE 478
           TGCEDG+VRL+ Y+S   NWS S+LLGEHVGGSAVRS+CCVS +H  SSD  ++P+   +
Sbjct: 787 TGCEDGSVRLSRYASEFGNWSTSELLGEHVGGSAVRSVCCVSNMHMMSSDVPNLPDMCDQ 846

Query: 479 VNAADKDKDSPTLLISVGAKRVITSWLLKTTSRDSKNDF-LTDHQYNSKGVDDKFVSSLS 537
             A D D +SP LLISVGAKRV+TSWLL+      K +  ++D+ +N         SS  
Sbjct: 847 DYAVD-DCESPRLLISVGAKRVVTSWLLRNGRHKKKGESCISDNGHNR-------ASSEV 898

Query: 538 SSMTFQWLSTDMPAKYSTTYKYPENNVKKVVGVAENVSNTKT 579
           S +TFQWL+TDMP KY    K  ++   K+ GV E+ S   T
Sbjct: 899 SPVTFQWLATDMPTKYRPCGKIEKS--PKLEGVEEDTSANVT 938