Miyakogusa Predicted Gene

Lj0g3v0274039.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0274039.2 tr|O49300|O49300_ARATH T26J12.6 protein
OS=Arabidopsis thaliana GN=T26J12.6 PE=4 SV=1,55.32,4e-16,ARM
repeat,Armadillo-type fold; ARM_REPEAT,Armadillo; Arm,Armadillo;
Armadillo/beta-catenin-like rep,CUFF.18149.2
         (262 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23180.1 | Symbols:  | ARM repeat superfamily protein | chr1:...   185   3e-47

>AT1G23180.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:8216125-8219515 FORWARD LENGTH=834
          Length = 834

 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/244 (45%), Positives = 152/244 (62%), Gaps = 25/244 (10%)

Query: 3   EKTIPQTECSNDQRVTLLPWVDGVARLVLILELEDKSAILRAAESIANACINEHMRIAFK 62
           EK I        Q++TLLP VDGVARLVLIL L D+ A  RAAESIA+A INE MR++F 
Sbjct: 404 EKEIKSEGPGKSQQLTLLPCVDGVARLVLILGLADELAATRAAESIADASINEDMRVSFM 463

Query: 63  EAGAIKHLIRLLTCDDN-TVQLAATQALEKLSASQGVCRVIEAEGVLGPLVSILKSSGIA 121
           EAGA+K L++LL  ++  TV+L   +AL+ LS S+ VC+ IEAEG +  L+++LK   I+
Sbjct: 464 EAGAVKPLVQLLANNNKETVKLPVIRALKNLSLSRTVCQRIEAEGAVWFLINLLKQPEIS 523

Query: 122 GTIVEKSLDILARIFDPSKEMQLKFYDGSVNGSVKAFDEAKNDGVSTGLSRTEKAISKTN 181
             + E  LDI+A I DPSKEM+ KFY+G VNG                        SK +
Sbjct: 524 LNVTEHVLDIIAHILDPSKEMESKFYEGPVNG------------------------SKAD 559

Query: 182 TRNDILDSVFITQLVEILKSSPPYLQEKAASVLEFVALTDPTLATIMSVDIENGLISAFQ 241
           +R ++LD+   ++LV+I K++ P L   A SV+EF  +++P + TI+S DI   L  A +
Sbjct: 560 SRKEVLDAAVFSRLVQIAKTASPNLLRNAISVIEFGIISNPNMDTIISKDITTVLDLALR 619

Query: 242 QKVL 245
           QKVL
Sbjct: 620 QKVL 623