Miyakogusa Predicted Gene

Lj0g3v0274039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0274039.1 Non Chatacterized Hit- tr|A5BYQ2|A5BYQ2_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,65.79,8e-18,ARM
repeat,Armadillo-type fold; ARM_REPEAT,Armadillo; Arm,Armadillo;
Proteasom_PSMB,26S proteasome n,CUFF.18149.1
         (542 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23180.1 | Symbols:  | ARM repeat superfamily protein | chr1:...   532   e-151
AT2G23140.1 | Symbols:  | RING/U-box superfamily protein with AR...    52   8e-07
AT2G23140.2 | Symbols:  | RING/U-box superfamily protein with AR...    52   8e-07

>AT1G23180.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:8216125-8219515 FORWARD LENGTH=834
          Length = 834

 Score =  532 bits (1370), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 282/475 (59%), Positives = 357/475 (75%), Gaps = 7/475 (1%)

Query: 57  RGDGGAVDANS-LPGIDAVESESS-GRSDGYVALFVRMLGLDHDFLDREQAIVALWKYSL 114
           R + G   +++ L   + V SESS G  D YV LFV MLGLD+D LDREQAI  LWKYSL
Sbjct: 74  RSNSGETGSDTTLKDGEEVRSESSSGVGDSYVGLFVGMLGLDNDPLDREQAIETLWKYSL 133

Query: 115 GGKKCVDSIMQFPGCINLVVNLLRXXXXXXXXXXXGLLRSLSSVNLYRNSVADSGAIEEI 174
           GGKKC+D+IMQF GC+NL+VNLL+           GL+RS++SVNLYR SVA+SGA+EEI
Sbjct: 134 GGKKCIDAIMQFHGCLNLIVNLLKSESSSACEAAAGLIRSIASVNLYRESVAESGALEEI 193

Query: 175 SRLLRQSSLAPEVKEQSLSTLWNLSVDEKLCIKIAESDILLLAIKYLDDEDIKVKEAAGG 234
           + LL + SLA  VKEQ +  LWNL+VDE++  K+A+ DIL L I +L+D+D+ VKEAAGG
Sbjct: 194 TALLSRPSLATVVKEQCICALWNLTVDEEIREKVADFDILRLLISFLEDDDVNVKEAAGG 253

Query: 235 ILANLALSRANHNIMVEAGVIPKLAKFLMPN---SEGSKVIRKEARNALLELVKDEYYKI 291
           +LANLALSR+ H I+VE GVIPKLAK L  +   ++GSKVIRKEARN LLEL KDEYY+I
Sbjct: 254 VLANLALSRSTHKILVEVGVIPKLAKLLKADNTENKGSKVIRKEARNVLLELAKDEYYRI 313

Query: 292 LVIEEGLVPVPLVGAAAYKSFTPGLHLWPTLPDGSEIERTSRQPSRFGASDLLLGLNIDD 351
           LVIEEG+VP+P++GA AYKSF P L+ WP+LPDG  IE+T++ PSRFGAS+LLLGLN+D 
Sbjct: 314 LVIEEGVVPIPIIGADAYKSFRPDLYSWPSLPDGINIEQTAKAPSRFGASELLLGLNVDK 373

Query: 352 KDPNIEEAKINAIVGRTQQRFLARIGAIEMEEKTIPQTECSNDQRVTLLPWVDGVARLVL 411
              +++EAK+ AIVGRT Q+FLARIGAIE  EK I        Q++TLLP VDGVARLVL
Sbjct: 374 NVDDVDEAKMKAIVGRTNQQFLARIGAIEF-EKEIKSEGPGKSQQLTLLPCVDGVARLVL 432

Query: 412 ILELEDKSAILRAAESIANACINEHMRIAFKEAGAIKHLIRLLTCDDN-TVQLAATQALE 470
           IL L D+ A  RAAESIA+A INE MR++F EAGA+K L++LL  ++  TV+L   +AL+
Sbjct: 433 ILGLADELAATRAAESIADASINEDMRVSFMEAGAVKPLVQLLANNNKETVKLPVIRALK 492

Query: 471 KLSASQGVCRVIEAEGVLGPLVSILKSSGIAGTIVEKSLDILARIFDPSKEMQLK 525
            LS S+ VC+ IEAEG +  L+++LK   I+  + E  LDI+A I DPSKEM+ K
Sbjct: 493 NLSLSRTVCQRIEAEGAVWFLINLLKQPEISLNVTEHVLDIIAHILDPSKEMESK 547


>AT2G23140.1 | Symbols:  | RING/U-box superfamily protein with ARM
           repeat domain | chr2:9845696-9849105 REVERSE LENGTH=829
          Length = 829

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 128 GCINLVVNLLRXXXXXXXXXXXGLLRSLSSVNLYRNSVADSGAIEEISRLLRQSSLAPEV 187
           G I L+V LL              L +LS  +  + ++AD+GAIE +  +L   S   E 
Sbjct: 586 GAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGS--SEA 643

Query: 188 KEQSLSTLWNLSVDEKLCIKIAESDILLLAIKYLDDEDIKVKEAAGGILANLALSRANHN 247
           KE S +TL++LSV E+  IKI +S  +   +  L +   + K+ A   L NL++ + N  
Sbjct: 644 KENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKA 703

Query: 248 IMVEAGVIPKLAKFLMP 264
           ++V++G +  L   + P
Sbjct: 704 MIVQSGAVRYLIDLMDP 720



 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 17/234 (7%)

Query: 84  GYVALFVRMLGLDHDFLDREQAIVALWKYSLG--GKKCVDSIMQFPGCINLVVNLLRXXX 141
           G + L V +L    D   +E A+ AL   S+    KK +       G I  ++++L    
Sbjct: 586 GAIVLLVELL-YSTDSATQENAVTALLNLSINDNNKKAIADA----GAIEPLIHVLENGS 640

Query: 142 XXXXXXXXGLLRSLSSVNLYRNSVADSGAIEEISRLLRQSSLAPEVKEQSLSTLWNLSVD 201
                     L SLS +   +  +  SGAI  +  LL   +  P  K+ + + L+NLS+ 
Sbjct: 641 SEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGT--PRGKKDAATALFNLSIH 698

Query: 202 EKLCIKIAESDILLLAIKYLDDEDIKVKEAAGGILANLALSRANHNIMVEAGVIPKLAKF 261
           ++    I +S  +   I  +D     V +A   +LANLA      N + + G IP L + 
Sbjct: 699 QENKAMIVQSGAVRYLIDLMDPAAGMVDKAV-AVLANLATIPEGRNAIGQEGGIPLLVEV 757

Query: 262 LMPNSEGSKVIRKEARNALLELVKDE-YYKILVIEEGLVPVPLVGAAAYKSFTP 314
           +     GS   ++ A  ALL+L  +   +  +V++EG VP PLV  A  +S TP
Sbjct: 758 V---ELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVP-PLV--ALSQSGTP 805


>AT2G23140.2 | Symbols:  | RING/U-box superfamily protein with ARM
           repeat domain | chr2:9845696-9848762 REVERSE LENGTH=826
          Length = 826

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 128 GCINLVVNLLRXXXXXXXXXXXGLLRSLSSVNLYRNSVADSGAIEEISRLLRQSSLAPEV 187
           G I L+V LL              L +LS  +  + ++AD+GAIE +  +L   S   E 
Sbjct: 583 GAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGS--SEA 640

Query: 188 KEQSLSTLWNLSVDEKLCIKIAESDILLLAIKYLDDEDIKVKEAAGGILANLALSRANHN 247
           KE S +TL++LSV E+  IKI +S  +   +  L +   + K+ A   L NL++ + N  
Sbjct: 641 KENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKA 700

Query: 248 IMVEAGVIPKLAKFLMP 264
           ++V++G +  L   + P
Sbjct: 701 MIVQSGAVRYLIDLMDP 717



 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 17/234 (7%)

Query: 84  GYVALFVRMLGLDHDFLDREQAIVALWKYSLG--GKKCVDSIMQFPGCINLVVNLLRXXX 141
           G + L V +L    D   +E A+ AL   S+    KK +       G I  ++++L    
Sbjct: 583 GAIVLLVELL-YSTDSATQENAVTALLNLSINDNNKKAIADA----GAIEPLIHVLENGS 637

Query: 142 XXXXXXXXGLLRSLSSVNLYRNSVADSGAIEEISRLLRQSSLAPEVKEQSLSTLWNLSVD 201
                     L SLS +   +  +  SGAI  +  LL   +  P  K+ + + L+NLS+ 
Sbjct: 638 SEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGT--PRGKKDAATALFNLSIH 695

Query: 202 EKLCIKIAESDILLLAIKYLDDEDIKVKEAAGGILANLALSRANHNIMVEAGVIPKLAKF 261
           ++    I +S  +   I  +D     V +A   +LANLA      N + + G IP L + 
Sbjct: 696 QENKAMIVQSGAVRYLIDLMDPAAGMVDKAV-AVLANLATIPEGRNAIGQEGGIPLLVEV 754

Query: 262 LMPNSEGSKVIRKEARNALLELVKDE-YYKILVIEEGLVPVPLVGAAAYKSFTP 314
           +     GS   ++ A  ALL+L  +   +  +V++EG VP PLV  A  +S TP
Sbjct: 755 V---ELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVP-PLV--ALSQSGTP 802