Miyakogusa Predicted Gene

Lj0g3v0273739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0273739.1 Non Chatacterized Hit- tr|D7KFW9|D7KFW9_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,41.11,0.00000000002,FtsH protease domain-like,NULL; seg,NULL;
FTSH HOMOLOG,NULL; METALLOPROTEASE M41 FTSH,NULL;
Peptidas,CUFF.18142.1
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79560.1 | Symbols: EMB156, EMB36, EMB1047, FTSH12 | FTSH pro...   244   2e-65
AT1G50250.1 | Symbols: FTSH1 | FTSH protease 1 | chr1:18614398-1...    73   1e-13
AT5G42270.1 | Symbols: VAR1, FTSH5 | FtsH extracellular protease...    73   1e-13

>AT1G79560.1 | Symbols: EMB156, EMB36, EMB1047, FTSH12 | FTSH
           protease 12 | chr1:29926976-29932308 FORWARD LENGTH=1008
          Length = 1008

 Score =  244 bits (623), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 112/124 (90%), Positives = 120/124 (96%)

Query: 1   MSVRKGHSKIFQQDLIDVLDKQLLEGMGVLLTEEEQQKCEESVSFEKKRLLAVHEAGHVV 60
           MSVRKG S I+QQD++DVLDKQLLEGMGVLLTEEEQQKCE+SVS+EKKRLLAVHEAGH+V
Sbjct: 716 MSVRKGRSYIYQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSYEKKRLLAVHEAGHIV 775

Query: 61  LAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMVDQGYTTFGYMMMQMVVAHGGRCAER 120
           LAHLFPRFDWHAFSQLLPGGKETA+SVFYPREDMVDQGYTTFGYM MQMVVAHGGRCAER
Sbjct: 776 LAHLFPRFDWHAFSQLLPGGKETAVSVFYPREDMVDQGYTTFGYMKMQMVVAHGGRCAER 835

Query: 121 LGFG 124
           + FG
Sbjct: 836 VVFG 839


>AT1G50250.1 | Symbols: FTSH1 | FTSH protease 1 |
           chr1:18614398-18616930 REVERSE LENGTH=716
          Length = 716

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 53/90 (58%)

Query: 37  QKCEESVSFEKKRLLAVHEAGHVVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMVD 96
           +K    VS EKKRL+A HEAGH ++  L P +D  A   ++P G+   ++ F P E+ ++
Sbjct: 507 EKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLE 566

Query: 97  QGYTTFGYMMMQMVVAHGGRCAERLGFGGE 126
            G  +  Y+  QM VA GGR AE + FG E
Sbjct: 567 SGLYSRSYLENQMAVALGGRVAEEVIFGDE 596


>AT5G42270.1 | Symbols: VAR1, FTSH5 | FtsH extracellular protease
           family | chr5:16902659-16905102 FORWARD LENGTH=704
          Length = 704

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 53/90 (58%)

Query: 37  QKCEESVSFEKKRLLAVHEAGHVVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMVD 96
           +K    VS EKKRL+A HEAGH ++  L P +D  A   ++P G+   ++ F P E+ ++
Sbjct: 495 EKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLE 554

Query: 97  QGYTTFGYMMMQMVVAHGGRCAERLGFGGE 126
            G  +  Y+  QM VA GGR AE + FG E
Sbjct: 555 SGLYSRSYLENQMAVALGGRVAEEVIFGDE 584