Miyakogusa Predicted Gene
- Lj0g3v0273499.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0273499.1 Non Chatacterized Hit- tr|A5AMC2|A5AMC2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,75.09,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2, ATP-binding
domain; SUBFAMILY NOT NAMED,NULL; ATP-DEP,CUFF.18116.1
(326 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein | c... 397 e-111
AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |... 177 1e-44
AT4G16680.1 | Symbols: | P-loop containing nucleoside triphosph... 147 9e-36
AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protei... 145 3e-35
AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein | chr1... 145 4e-35
AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family prote... 145 4e-35
AT1G26370.1 | Symbols: | RNA helicase family protein | chr1:912... 137 8e-33
AT1G27900.1 | Symbols: | RNA helicase family protein | chr1:971... 128 5e-30
AT3G62310.1 | Symbols: | RNA helicase family protein | chr3:230... 127 1e-29
AT4G18465.1 | Symbols: | RNA helicase family protein | chr4:101... 123 1e-28
AT2G47250.1 | Symbols: | RNA helicase family protein | chr2:193... 119 2e-27
AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protei... 108 6e-24
AT5G04895.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 105 3e-23
AT2G35920.1 | Symbols: | RNA helicase family protein | chr2:150... 101 8e-22
AT2G01130.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 98 8e-21
AT1G48650.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 94 2e-19
AT1G48650.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 94 2e-19
AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissu... 87 1e-17
AT1G58060.1 | Symbols: | RNA helicase family protein | chr1:214... 87 1e-17
AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase | chr1:204... 85 6e-17
AT5G10370.1 | Symbols: | helicase domain-containing protein / I... 77 1e-14
AT4G01020.1 | Symbols: | helicase domain-containing protein / I... 75 6e-14
AT1G58050.1 | Symbols: | RNA helicase family protein | chr1:214... 75 8e-14
AT2G47680.1 | Symbols: | zinc finger (CCCH type) helicase famil... 61 9e-10
>AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein |
chr5:4122747-4128660 FORWARD LENGTH=1255
Length = 1255
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/271 (73%), Positives = 229/271 (84%), Gaps = 11/271 (4%)
Query: 48 SHWEDRQLINSGVVRRGIQTCEFDDDEEEHTKVTLLVHDTKPPFLDGRLVFTKQADPIMP 107
+ WEDRQL+ SG VR EFD +EE K LLVHDTKPPFLDGR+V+TKQA+P+MP
Sbjct: 398 AQWEDRQLLRSGAVRGTEVQTEFDSEEER--KAILLVHDTKPPFLDGRVVYTKQAEPVMP 455
Query: 108 IKDPTSDMAIISCKGSNLVRKIHEKQSMDKSRKHFWELAGSKLGDILGVEKTAEEMDA-- 165
+KDPTSDMAIIS KGS LV++I EKQS +KSR+ FWELAGS LG+ILG+EK+AE++DA
Sbjct: 456 VKDPTSDMAIISRKGSGLVKEIREKQSANKSRQRFWELAGSNLGNILGIEKSAEQIDADT 515
Query: 166 --VGQDGKIDL---PKFSQHLNKREEAVSEFAKSKSMSEQRQYLPIFSVREELLQVIREN 220
VG DG++D KF+QH+ K+ EAVSEFA SK+M+EQRQYLPIFSVR+ELLQVIREN
Sbjct: 516 AVVGDDGEVDFKGEAKFAQHM-KKGEAVSEFAMSKTMAEQRQYLPIFSVRDELLQVIREN 574
Query: 221 QXXXXXGETGSGKSTQLAQYLHEDGYTVGGGIVGCTQPRRVAAMSVAKRVSEEMETELGD 280
Q GETGSGK+TQL QYLHEDGYT+ GIVGCTQPRRVAAMSVAKRVSEEMETELGD
Sbjct: 575 QVIVVVGETGSGKTTQLTQYLHEDGYTI-NGIVGCTQPRRVAAMSVAKRVSEEMETELGD 633
Query: 281 QVGYAIRFEDVTGPNTIIKYMTDGVLLRETL 311
++GYAIRFEDVTGPNT+IKYMTDGVLLRETL
Sbjct: 634 KIGYAIRFEDVTGPNTVIKYMTDGVLLRETL 664
>AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |
chr3:9750122-9753719 REVERSE LENGTH=1168
Length = 1168
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 168/287 (58%), Gaps = 28/287 (9%)
Query: 45 KKLS---HWEDRQLINSGVVRRGIQTCEFDDD--------EEEHTKVTLLVHDTKPPFLD 93
KK+S WE +QLI SGV+R + +D+D E ++ + +++ +P FL
Sbjct: 343 KKMSSPERWEAKQLIASGVLRVD-EFPMYDEDGDGMLYQEEGAEEELEIEMNEDEPAFLQ 401
Query: 94 GRLVFTKQADPIMPIKDPTSDMAIISCKGSNLV---RKIHEKQ------SMDKSRKHFWE 144
G+ ++ P+ K+P ++ + S L R++ E+Q S+ K WE
Sbjct: 402 GQTRYSVDMSPVKIFKNPEGSLSRAAALQSALTKERREMREQQQRTMLDSIPKDLNRPWE 461
Query: 145 LAGSKLGDILGVEKTAEEMDAVGQDGKIDLPKFSQHLNKREEAVSEFAKSKSMSEQRQYL 204
+ G+ A+E+ VG D+P++ + + + +K S+ EQR+ L
Sbjct: 462 DPMPETGE----RHLAQELRGVGLSA-YDMPEWKKDAFGKTPTFGQRSKL-SIQEQRESL 515
Query: 205 PIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHEDGYTVGGGIVGCTQPRRVAAM 264
PI+ +++EL+Q + +NQ GETGSGK+TQ+ QYL E GYT G I GCTQPRRVAAM
Sbjct: 516 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKI-GCTQPRRVAAM 574
Query: 265 SVAKRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLRETL 311
SVAKRV+EE LG++VGYAIRFED TGP+T+IKYMTDG+LLRE L
Sbjct: 575 SVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREIL 621
>AT4G16680.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:9388613-9390774
REVERSE LENGTH=656
Length = 656
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/143 (55%), Positives = 99/143 (69%), Gaps = 5/143 (3%)
Query: 173 DLPKFSQHLNKREEAVSEFAKSKSMSEQ----RQYLPIFSVREELLQVIRENQXXXXXGE 228
DL F + ++ E SK+ +E+ R++LPI REELL++I ENQ GE
Sbjct: 180 DLTGFVEESSEAETGKHRGCYSKTAAEKAREGREFLPIHGYREELLKLIEENQVLVIVGE 239
Query: 229 TGSGKSTQLAQYLHEDGYTVGGGIVGCTQPRRVAAMSVAKRVSEEMETELGDQVGYAIRF 288
TGSGK+TQ+ QYL E GYT G I GCTQPRRVAAMSVA RV++E+ +LG +VGY+IRF
Sbjct: 240 TGSGKTTQIPQYLQEAGYTKRGKI-GCTQPRRVAAMSVASRVAQEVGVKLGHEVGYSIRF 298
Query: 289 EDVTGPNTIIKYMTDGVLLRETL 311
ED T T+IKYMTDG+LLRE L
Sbjct: 299 EDCTSEKTVIKYMTDGMLLRELL 321
>AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protein |
chr2:14872728-14879615 FORWARD LENGTH=1044
Length = 1044
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 197 MSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHEDGYTVGGGIVGCT 256
+ E R+ LPI++ R++LL ++++Q GETGSGK+TQ+ QYLHE GYT G VGCT
Sbjct: 397 LQEDRKALPIYTYRDQLLNAVKDHQVLIIVGETGSGKTTQIPQYLHEAGYTKLGK-VGCT 455
Query: 257 QPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLRETL 311
QPRRVAAMSVA RV++EM +LG +VGY+IRFED T TI+KYMTDG+LLRE L
Sbjct: 456 QPRRVAAMSVAARVAQEMGGKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLRELL 510
>AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein |
chr1:11742356-11749286 REVERSE LENGTH=1034
Length = 1034
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 197 MSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHEDGYTVGGGIVGCT 256
+ E R+ LPI++ R++LL+ + E+Q G+TGSGK+TQ+ QYLHE GYT G VGCT
Sbjct: 387 LQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGK-VGCT 445
Query: 257 QPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLRETL 311
QPRRVAAMSVA RV++EM +LG +VGY+IRFED T T++KYMTDG+LLRE L
Sbjct: 446 QPRRVAAMSVAARVAQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLRELL 500
>AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family protein
| chr1:11742356-11749286 REVERSE LENGTH=1044
Length = 1044
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 197 MSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHEDGYTVGGGIVGCT 256
+ E R+ LPI++ R++LL+ + E+Q G+TGSGK+TQ+ QYLHE GYT G VGCT
Sbjct: 397 LQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGK-VGCT 455
Query: 257 QPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLRETL 311
QPRRVAAMSVA RV++EM +LG +VGY+IRFED T T++KYMTDG+LLRE L
Sbjct: 456 QPRRVAAMSVAARVAQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLRELL 510
>AT1G26370.1 | Symbols: | RNA helicase family protein |
chr1:9122030-9125368 REVERSE LENGTH=717
Length = 717
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 94/130 (72%)
Query: 182 NKREEAVSEFAKSKSMSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYL 241
N + VS F+ + ++E R+ LPI SV + L++ +++N GETGSGK+TQL Q+L
Sbjct: 19 NPKSPTVSPFSMRQKIAEHRRSLPIASVEKRLVEEVQKNDILIIVGETGSGKTTQLPQFL 78
Query: 242 HEDGYTVGGGIVGCTQPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYM 301
+ G+ G ++G TQPRR+AA++VAKRV+EE E +LG +VGY+IRF+D T +T +KYM
Sbjct: 79 YNAGFCREGKMIGITQPRRIAAVTVAKRVAEECEVQLGQKVGYSIRFDDTTSGSTRLKYM 138
Query: 302 TDGVLLRETL 311
TDG+LLRE L
Sbjct: 139 TDGLLLREAL 148
>AT1G27900.1 | Symbols: | RNA helicase family protein |
chr1:9715615-9720346 REVERSE LENGTH=700
Length = 700
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 204 LPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHEDGYTVGGGIVGCTQPRRVAA 263
LPI E++++ + +N GETGSGKSTQL+Q LH GYT G++ TQPRRVAA
Sbjct: 4 LPILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQILHRHGYT-KSGVIAITQPRRVAA 62
Query: 264 MSVAKRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLRETLN 312
+SVA+RV++E++ LG+ VGYAIRFED T T IKY+TDGVLLRE+L+
Sbjct: 63 VSVARRVAQELDVPLGEDVGYAIRFEDRTTSKTRIKYLTDGVLLRESLS 111
>AT3G62310.1 | Symbols: | RNA helicase family protein |
chr3:23057516-23060561 REVERSE LENGTH=726
Length = 726
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 87/118 (73%), Gaps = 5/118 (4%)
Query: 199 EQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHE--DGYTVGG---GIV 253
E+R+ LP++ +EE L+ + NQ GETGSGK+TQ+ Q++ + D T +V
Sbjct: 56 EKRRTLPVWLQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKWLV 115
Query: 254 GCTQPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLRETL 311
GCTQPRRVAAMSV++RV+EEM+ +G++VGY+IRFED + P T++KY+TDG+LLRE +
Sbjct: 116 GCTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAM 173
>AT4G18465.1 | Symbols: | RNA helicase family protein |
chr4:10197056-10201611 FORWARD LENGTH=695
Length = 695
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 196 SMSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHEDGYTVGGGIVGC 255
++ +QRQ LP++ R E+L ++ + GETGSGK+TQ+ QYL E G+ GG ++ C
Sbjct: 40 NIEKQRQRLPVYKYRTEILYLVENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRVIAC 99
Query: 256 TQPRRVAAMSVAKRVSEEMETELGDQVGYAIRFED-VTGPNTIIKYMTDGVLLRETL 311
TQPRR+A +V+ RV+EEM LG++VGY IRFED T T +K++TDGVL+RE +
Sbjct: 100 TQPRRLAVQAVSARVAEEMGVNLGEEVGYTIRFEDHTTSGVTSVKFLTDGVLIREMM 156
>AT2G47250.1 | Symbols: | RNA helicase family protein |
chr2:19399923-19402981 REVERSE LENGTH=729
Length = 729
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 85/118 (72%), Gaps = 5/118 (4%)
Query: 199 EQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHE----DGYTVG-GGIV 253
E+R+ LP++ +++ L + NQ GETGSGK+TQ+ Q++ + D G +V
Sbjct: 60 EKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLV 119
Query: 254 GCTQPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLRETL 311
GCTQPRRVAAMSV++RV++EM+ +G++VGY+IRFED T T++KY+TDG+LLRE +
Sbjct: 120 GCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAM 177
>AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protein |
chr1:12099738-12104108 REVERSE LENGTH=1237
Length = 1237
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 87/144 (60%), Gaps = 15/144 (10%)
Query: 174 LPKFSQHLNKREEAVSEFAKSKSMSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGK 233
+P F H+++ E + E R+ LPI + +E+++ I + G+TG GK
Sbjct: 221 VPAFVVHVSRPAE----------VEETRKDLPIVMMEQEIMEAINRHPAVIISGQTGCGK 270
Query: 234 STQLAQYLHEDGY-----TVGGGIVGCTQPRRVAAMSVAKRVSEEMETELGDQVGYAIRF 288
+TQ+ Q+L+E G+ + GI+G TQPRRVA ++ AKRV+ E+ LG +VG+ +R+
Sbjct: 271 TTQVPQFLYEAGFGSKQFSSRSGIIGITQPRRVAVLATAKRVAFELGVRLGKEVGFQVRY 330
Query: 289 EDVTGPNTIIKYMTDGVLLRETLN 312
+ G N+ IK+MTDG+LLRE N
Sbjct: 331 DKKIGENSSIKFMTDGILLREIQN 354
>AT5G04895.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:1428796-1434516 FORWARD LENGTH=1161
Length = 1161
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 158 KTAEEMDAVGQDGKID-------LPKFSQHLNKREEAVSEFAKSKSMSEQRQYLPIFSVR 210
K EE+ D +D L + S + + E + ++M E R+ LP F +
Sbjct: 207 KQTEELPDENSDSFLDGSVMEKVLQRRSMRMRNMQRTWQESPEGRTMLEFRKTLPSFKDK 266
Query: 211 EELLQVIRENQXXXXXGETGSGKSTQLAQYLHEDGYTVGGGI---VGCTQPRRVAAMSVA 267
E LLQ I NQ GETG GK+TQL QY+ E G G + CTQPRR++AM+V+
Sbjct: 267 ERLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVS 326
Query: 268 KRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLRETLN 312
+RVS E LG+ VG+ +R E + G NT + + T G+LLR L+
Sbjct: 327 ERVSAERGEPLGETVGFKVRLEGMRGKNTHLLFCTSGILLRRLLS 371
>AT2G35920.1 | Symbols: | RNA helicase family protein |
chr2:15075674-15080506 FORWARD LENGTH=995
Length = 995
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 176 KFSQHLNKREEAVSEFAKSKSMSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKST 235
KFS L +R+E + K++ R+ LP F ++EE L + +NQ GETG GK+T
Sbjct: 200 KFSFALKERQEKLKATESVKALKAFREKLPAFKMKEEFLNSVSQNQVLVVSGETGCGKTT 259
Query: 236 QLAQYLHEDGYTVGGGI---VGCTQPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVT 292
QL Q++ E+ + G + CTQPRR++A+SVA R+S E +G+ VGY IR E
Sbjct: 260 QLPQFILEEEISSLRGADCNIICTQPRRISAISVASRISAERGESIGESVGYQIRLESKR 319
Query: 293 GPNTIIKYMTDGVLLRETL 311
T + + T GVLLR +
Sbjct: 320 SDQTRLLFCTTGVLLRRLI 338
>AT2G01130.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:88847-94635 REVERSE LENGTH=1113
Length = 1113
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 178 SQHLNKREEAVSEFAKSKSMSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQL 237
S L R++ + + M + R LP F R +L I +NQ GETG GK+TQ+
Sbjct: 194 SLQLRDRQQYWQASVEGQRMLDSRTSLPAFKQRHSVLTAISQNQVIVISGETGCGKTTQI 253
Query: 238 AQYLHEDGYTVGGGI---VGCTQPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVTGP 294
Q++ E G + CTQPRR++AMSV++RV+ E +LG+ VGY +R E V G
Sbjct: 254 PQFILESEIEANRGAFSSIICTQPRRISAMSVSERVAYERGEQLGESVGYKVRLEGVKGR 313
Query: 295 NTIIKYMTDGVLLRETL 311
+T + + T G+LLR L
Sbjct: 314 DTRLLFCTTGILLRRLL 330
>AT1G48650.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:17989670-17995169 REVERSE LENGTH=1197
Length = 1197
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 178 SQHLNKREEAVSEFAKSKSMSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQL 237
S L +++ + + + M R+ LP + ++ LL+ I NQ GETG GK+TQL
Sbjct: 273 SLQLKSKQQQWVDSPEGQKMVGFRKTLPAYKEKDALLKAIAANQVVVVSGETGCGKTTQL 332
Query: 238 AQYLHEDGYTVGGGI---VGCTQPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVTGP 294
QY+ E G + CTQPRR++A+SV++RV+ E ++G+ VGY +R E + G
Sbjct: 333 PQYILESEIEAARGATCSIICTQPRRISAISVSERVAAERGEQIGESVGYKVRLEGMRGR 392
Query: 295 NTIIKYMTDGVLLRETL 311
+T + + T GVLLR L
Sbjct: 393 DTRLLFCTTGVLLRRLL 409
>AT1G48650.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:17989517-17995169 REVERSE LENGTH=1206
Length = 1206
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 178 SQHLNKREEAVSEFAKSKSMSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQL 237
S L +++ + + + M R+ LP + ++ LL+ I NQ GETG GK+TQL
Sbjct: 273 SLQLKSKQQQWVDSPEGQKMVGFRKTLPAYKEKDALLKAIAANQVVVVSGETGCGKTTQL 332
Query: 238 AQYLHEDGYTVGGGI---VGCTQPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVTGP 294
QY+ E G + CTQPRR++A+SV++RV+ E ++G+ VGY +R E + G
Sbjct: 333 PQYILESEIEAARGATCSIICTQPRRISAISVSERVAAERGEQIGESVGYKVRLEGMRGR 392
Query: 295 NTIIKYMTDGVLLRETL 311
+T + + T GVLLR L
Sbjct: 393 DTRLLFCTTGVLLRRLL 409
>AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue
and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299
Length = 1299
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 195 KSMSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHEDGYTVGGGI-- 252
K +++ R LPI S ++ + + NQ GETG GK+TQ+ QYL + ++
Sbjct: 178 KEITKLRSKLPITSFKDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKRETCK 237
Query: 253 VGCTQPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLR 308
+ CTQPRR++AMSV++R+S E +G+ +GY +R + G ++ + + T+G+LLR
Sbjct: 238 IVCTQPRRISAMSVSERISCERGESIGENIGYKVRLQSKGGRHSSVVFCTNGILLR 293
>AT1G58060.1 | Symbols: | RNA helicase family protein |
chr1:21489480-21501775 REVERSE LENGTH=1459
Length = 1459
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 7/136 (5%)
Query: 181 LNKREEAVSEFAKSKSMSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQY 240
L +++E K K M + R LPI V+ +LQ ++E GETGSGK+TQ+ Q+
Sbjct: 591 LQRKQENKKRTQKYKDMLKTRTALPISEVKNGILQHLKEKDVLVVCGETGSGKTTQVPQF 650
Query: 241 LHEDGYTVGGG---IVGCTQPRRVAAMSVAKRVSEE-METELG---DQVGYAIRFEDVTG 293
+ +D G G + CTQPRR+AA+SVA+RV++E E+ G VGY +R E
Sbjct: 651 ILDDMIDSGHGGYCNIICTQPRRIAAISVAQRVADERCESSPGLDDSLVGYQVRLESARS 710
Query: 294 PNTIIKYMTDGVLLRE 309
T + + T G+LLR+
Sbjct: 711 DKTRLLFCTTGILLRK 726
>AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase |
chr1:2040567-2047333 FORWARD LENGTH=1576
Length = 1576
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 199 EQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHEDGYTVG--GGIVGCT 256
E R LPI S R+ ++ + NQ GETG GK+TQ+ QYL + + + CT
Sbjct: 212 EARSKLPIASFRDAIISAVESNQVVLIAGETGCGKTTQVPQYLLDHMWHSKKEACKIICT 271
Query: 257 QPRRVAAMSVAKRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLR 308
QPRR++A+SV+ R+S E +G VGY +R + G + + + T+G+LLR
Sbjct: 272 QPRRISAISVSDRISWERGETIGRTVGYKVRLQSEGGRESSVVFCTNGILLR 323
>AT5G10370.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
| chr5:3261245-3267188 FORWARD LENGTH=1775
Length = 1775
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 204 LPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHEDGYTVGGGIVGCTQPRRVAA 263
LPI++ R ++L+ I Q GETGSGKSTQL Q+L + G IV CTQPR++AA
Sbjct: 306 LPIYAYRRQILKKIHREQIMVLIGETGSGKSTQLVQFLADSGVAASESIV-CTQPRKIAA 364
Query: 264 MSVAKRVSEEME-TELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLRETL 311
M++A RV EE + V F ++ + YMTD LL+ +
Sbjct: 365 MTLADRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYM 413
>AT4G01020.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
| chr4:439086-445043 FORWARD LENGTH=1787
Length = 1787
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 204 LPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHEDGYTVGGGIVGCTQPRRVAA 263
LPI++ R ++L+ I Q GETGSGKSTQL Q+L + G IV CTQPR++AA
Sbjct: 303 LPIYAYRRQILKKIHCEQIMVLIGETGSGKSTQLVQFLADSGVAASESIV-CTQPRKIAA 361
Query: 264 MSVAKRVSEEMETELGDQ-VGYAIRFEDVTGPNTIIKYMTDGVLLRETL 311
M++ RV EE + V F ++ + YMTD LL+ +
Sbjct: 362 MTLTDRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYM 410
>AT1G58050.1 | Symbols: | RNA helicase family protein |
chr1:21478590-21487839 REVERSE LENGTH=1417
Length = 1417
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 77/136 (56%), Gaps = 10/136 (7%)
Query: 181 LNKREEAVSEFAKSKSMSEQRQYLPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQY 240
L +++E + K K M + R LPI V++++LQ ++E GETGSGK+TQ+ Q+
Sbjct: 574 LKQKQENKKKMQKYKDMLKTRAALPISEVKKDILQKLKEKDVLVVCGETGSGKTTQVPQF 633
Query: 241 LHEDGYTVGGG---IVGCTQPRRVAAMSVAKRVSEE-METELG---DQVGYAIRFEDVTG 293
+ +D G G + CTQPR A++VA+RV++E E G V Y +R ++
Sbjct: 634 ILDDMIDSGHGGYCNIICTQPR---AITVAQRVADERCEPPPGFDNSVVAYQVRHQNARS 690
Query: 294 PNTIIKYMTDGVLLRE 309
T + + T G+LLR+
Sbjct: 691 DKTRLLFCTTGILLRK 706
>AT2G47680.1 | Symbols: | zinc finger (CCCH type) helicase family
protein | chr2:19545828-19550871 REVERSE LENGTH=1015
Length = 1015
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 204 LPIFSVREELLQVIRENQXXXXXGETGSGKSTQLAQYLHEDGYTVGGGIVGCTQPRRVAA 263
LPI +++ ++ I EN+ GE G GKS+Q+ Q+L E + CTQPRR A
Sbjct: 26 LPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLE----ANMAPILCTQPRRFAV 81
Query: 264 MSVAKRVSEEMETELGDQVGYAIRFEDVTGPNTIIKYMTDGVLLRETLN 312
++VAK V++ ++LG ++GY I + + I + T GVLL E L+
Sbjct: 82 VAVAKMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDEMLD 130