Miyakogusa Predicted Gene
- Lj0g3v0273479.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0273479.1 Non Chatacterized Hit- tr|I1KWF8|I1KWF8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,89.11,0,RNase_PH,Exoribonuclease, phosphorolytic domain 1;
RNase_PH_C,Exoribonuclease, phosphorolytic domain,CUFF.18117.1
(303 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60080.1 | Symbols: | 3'-5'-exoribonuclease family protein |... 372 e-103
AT3G60500.3 | Symbols: CER7 | 3'-5'-exoribonuclease family prote... 84 2e-16
AT3G60500.2 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family p... 84 2e-16
AT3G60500.1 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family p... 84 2e-16
AT3G07750.2 | Symbols: | 3'-5'-exoribonuclease family protein |... 82 6e-16
AT3G07750.1 | Symbols: | 3'-5'-exoribonuclease family protein |... 82 6e-16
AT3G12990.3 | Symbols: RRP45a | ribonuclease PH45A | chr3:415634... 75 6e-14
AT3G12990.2 | Symbols: RRP45a | ribonuclease PH45A | chr3:415634... 75 6e-14
AT3G12990.1 | Symbols: RRP45a | ribonuclease PH45A | chr3:415634... 75 6e-14
>AT1G60080.1 | Symbols: | 3'-5'-exoribonuclease family protein |
chr1:22152605-22154339 REVERSE LENGTH=302
Length = 302
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/296 (62%), Positives = 221/296 (74%), Gaps = 4/296 (1%)
Query: 1 MGLPNTSEDLSSEMEVDAXXXXXXXXXXXXXXSESIRPDGRPLAKARDTSIFLGAVASAN 60
MG+P+ ++DLS+EMEVDA SES+RPDGR L KARDT + LG V++A+
Sbjct: 1 MGIPDAAQDLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTAD 60
Query: 61 GSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAIDFHMPPICSPIVRPGRPAEASPVVT 120
GSAL KIGSTTML AI+MEVM PS +SPD GCIAI+FHMPPICSP VRPGRPAEA+PV++
Sbjct: 61 GSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVIS 120
Query: 121 KQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYCXXXXXXXXXXXXXXXXXXXXXXQIP 180
K+LSDTI SSGMIDLKEL LVSGKAAWM YLD+YC QIP
Sbjct: 121 KRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIP 180
Query: 181 SVAMNDDGKIVLVSDEDGQKQA----QELVNKEKRKLTLRNIPFSLTCILYKNYILADPT 236
VA+ND+G+IV V+ E Q A +E VNKEKRKLTL+NIPFSLTCIL+KNYILADPT
Sbjct: 181 IVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADPT 240
Query: 237 AEEESIMETHMTVVLNTSGQLISLYKPGGPVLAYTSALQDCVALTRQRVKELKSLL 292
EEESIM+T +TVVL++S Q++S YK GG LAY+SA++ CV L R+R KELK +L
Sbjct: 241 TEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQIL 296
>AT3G60500.3 | Symbols: CER7 | 3'-5'-exoribonuclease family protein
| chr3:22354245-22356440 FORWARD LENGTH=438
Length = 438
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 111/252 (44%), Gaps = 16/252 (6%)
Query: 36 IRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAI 95
+R DGR L R +I G GS+ V++G T ++ + +++ P + P+ G ++I
Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQLVQPYKDRPNEGSLSI 83
Query: 96 DFHMPPICSPIVRPGRPAEASPVVTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYC 155
P+ P PGRP E++ + + + + S +D + L +++GK W +D++
Sbjct: 84 FTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMVWSVRIDLHI 143
Query: 156 XXXXXXXXXXXXXXXXXXXXXXQIPSVAMNDDGKIVLVSDEDGQKQ-AQELVNKEKRKLT 214
+ P V E+GQ+ L +E L
Sbjct: 144 LDNGGNLVDAANIAALAALMTFRRPDCT---------VGGENGQEVIIHPLEEREPLPLI 194
Query: 215 LRNIPFSLTCILYK--NYILADPTAEEESIMETHMTVVLNTSGQLISLYKPGGPVLAYTS 272
+ ++P + T + N ++ DPT EE++M MTV +N +G + ++ KPG + +
Sbjct: 195 IHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEGVNQSV 254
Query: 273 ALQDCVALTRQR 284
L C+ L R
Sbjct: 255 ILH-CLRLASSR 265
>AT3G60500.2 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family
protein | chr3:22354245-22356440 FORWARD LENGTH=438
Length = 438
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 111/252 (44%), Gaps = 16/252 (6%)
Query: 36 IRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAI 95
+R DGR L R +I G GS+ V++G T ++ + +++ P + P+ G ++I
Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQLVQPYKDRPNEGSLSI 83
Query: 96 DFHMPPICSPIVRPGRPAEASPVVTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYC 155
P+ P PGRP E++ + + + + S +D + L +++GK W +D++
Sbjct: 84 FTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMVWSVRIDLHI 143
Query: 156 XXXXXXXXXXXXXXXXXXXXXXQIPSVAMNDDGKIVLVSDEDGQKQ-AQELVNKEKRKLT 214
+ P V E+GQ+ L +E L
Sbjct: 144 LDNGGNLVDAANIAALAALMTFRRPDCT---------VGGENGQEVIIHPLEEREPLPLI 194
Query: 215 LRNIPFSLTCILYK--NYILADPTAEEESIMETHMTVVLNTSGQLISLYKPGGPVLAYTS 272
+ ++P + T + N ++ DPT EE++M MTV +N +G + ++ KPG + +
Sbjct: 195 IHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEGVNQSV 254
Query: 273 ALQDCVALTRQR 284
L C+ L R
Sbjct: 255 ILH-CLRLASSR 265
>AT3G60500.1 | Symbols: CER7, G3 | 3'-5'-exoribonuclease family
protein | chr3:22354245-22356440 FORWARD LENGTH=438
Length = 438
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 111/252 (44%), Gaps = 16/252 (6%)
Query: 36 IRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAI 95
+R DGR L R +I G GS+ V++G T ++ + +++ P + P+ G ++I
Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQLVQPYKDRPNEGSLSI 83
Query: 96 DFHMPPICSPIVRPGRPAEASPVVTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYC 155
P+ P PGRP E++ + + + + S +D + L +++GK W +D++
Sbjct: 84 FTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMVWSVRIDLHI 143
Query: 156 XXXXXXXXXXXXXXXXXXXXXXQIPSVAMNDDGKIVLVSDEDGQKQ-AQELVNKEKRKLT 214
+ P V E+GQ+ L +E L
Sbjct: 144 LDNGGNLVDAANIAALAALMTFRRPDCT---------VGGENGQEVIIHPLEEREPLPLI 194
Query: 215 LRNIPFSLTCILYK--NYILADPTAEEESIMETHMTVVLNTSGQLISLYKPGGPVLAYTS 272
+ ++P + T + N ++ DPT EE++M MTV +N +G + ++ KPG + +
Sbjct: 195 IHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEGVNQSV 254
Query: 273 ALQDCVALTRQR 284
L C+ L R
Sbjct: 255 ILH-CLRLASSR 265
>AT3G07750.2 | Symbols: | 3'-5'-exoribonuclease family protein |
chr3:2473486-2475218 FORWARD LENGTH=286
Length = 286
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 123/276 (44%), Gaps = 13/276 (4%)
Query: 33 SESIRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGC 92
++ +R DGR R + G + ANGSA V+IG T ++ ++K E+ PS PD G
Sbjct: 16 AQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQPDKGK 75
Query: 93 IAIDFHMPPICSPIV--RPGR--PAEASPVVTKQLSDTISSSGM-IDLKELSLVSGKAAW 147
+A+ P P R G +E + + + L S +G I+L L + GK W
Sbjct: 76 VAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIKEGKVCW 135
Query: 148 MAYLDVYCXXXXXXXXXXXXXXXXXXXXXXQIPSVAMNDDGKIVLVSDEDGQKQAQELVN 207
Y+D IP V ++ + V+D+ ++ ++ +
Sbjct: 136 DLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAE-----VADD--EQPEIDISD 188
Query: 208 KEKRKLTLRNIPFSLTCILYKNYILADPTAEEESIMETHMTVVLNTSGQLISLYKPGGPV 267
+E + ++P +T + + D TAEEES M + +++ +N +G + L K G
Sbjct: 189 EEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRSGSG 248
Query: 268 LAYTSALQDCVALTRQRVKELKSLLDRENSAAMEVE 303
L S + D +++ + + L S LD E SAA E
Sbjct: 249 LD-PSVILDMISVAKHVTETLMSKLDSEISAAEACE 283
>AT3G07750.1 | Symbols: | 3'-5'-exoribonuclease family protein |
chr3:2473486-2475218 FORWARD LENGTH=286
Length = 286
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 123/276 (44%), Gaps = 13/276 (4%)
Query: 33 SESIRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGC 92
++ +R DGR R + G + ANGSA V+IG T ++ ++K E+ PS PD G
Sbjct: 16 AQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQPDKGK 75
Query: 93 IAIDFHMPPICSPIV--RPGR--PAEASPVVTKQLSDTISSSGM-IDLKELSLVSGKAAW 147
+A+ P P R G +E + + + L S +G I+L L + GK W
Sbjct: 76 VAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIKEGKVCW 135
Query: 148 MAYLDVYCXXXXXXXXXXXXXXXXXXXXXXQIPSVAMNDDGKIVLVSDEDGQKQAQELVN 207
Y+D IP V ++ + V+D+ ++ ++ +
Sbjct: 136 DLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAE-----VADD--EQPEIDISD 188
Query: 208 KEKRKLTLRNIPFSLTCILYKNYILADPTAEEESIMETHMTVVLNTSGQLISLYKPGGPV 267
+E + ++P +T + + D TAEEES M + +++ +N +G + L K G
Sbjct: 189 EEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRSGSG 248
Query: 268 LAYTSALQDCVALTRQRVKELKSLLDRENSAAMEVE 303
L S + D +++ + + L S LD E SAA E
Sbjct: 249 LD-PSVILDMISVAKHVTETLMSKLDSEISAAEACE 283
>AT3G12990.3 | Symbols: RRP45a | ribonuclease PH45A |
chr3:4156345-4157842 FORWARD LENGTH=307
Length = 307
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 36 IRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAI 95
+R DGR L R +I G GS+ V++G T ++ + +++ P + P G +I
Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFVTAQLVQPYKDRPSEGSFSI 83
Query: 96 DFHMPPICSPIVRPGRPAEASPVVTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYC 155
P+ P PG P E++ + + + + S +D + L +++GK W +D++
Sbjct: 84 FTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLVWSVRIDLHI 143
Query: 156 XXXXXXXXXXXXXXXXXXXXXXQIPSVAM-NDDGKIVLVSDEDGQKQAQELVNKEKRKLT 214
+ P + D+ + V++ + +E L
Sbjct: 144 LDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPE---------EREPLPLI 194
Query: 215 LRNIPFSLTCILY-KNYILA-DPTAEEESIMETHMTVVLNTSGQLISLYKPG 264
+ ++P + T + K IL DPT EE++M MTV +N +G + ++ KPG
Sbjct: 195 IHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPG 246
>AT3G12990.2 | Symbols: RRP45a | ribonuclease PH45A |
chr3:4156345-4157842 FORWARD LENGTH=307
Length = 307
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 36 IRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAI 95
+R DGR L R +I G GS+ V++G T ++ + +++ P + P G +I
Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFVTAQLVQPYKDRPSEGSFSI 83
Query: 96 DFHMPPICSPIVRPGRPAEASPVVTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYC 155
P+ P PG P E++ + + + + S +D + L +++GK W +D++
Sbjct: 84 FTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLVWSVRIDLHI 143
Query: 156 XXXXXXXXXXXXXXXXXXXXXXQIPSVAM-NDDGKIVLVSDEDGQKQAQELVNKEKRKLT 214
+ P + D+ + V++ + +E L
Sbjct: 144 LDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPE---------EREPLPLI 194
Query: 215 LRNIPFSLTCILY-KNYILA-DPTAEEESIMETHMTVVLNTSGQLISLYKPG 264
+ ++P + T + K IL DPT EE++M MTV +N +G + ++ KPG
Sbjct: 195 IHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPG 246
>AT3G12990.1 | Symbols: RRP45a | ribonuclease PH45A |
chr3:4156345-4157842 FORWARD LENGTH=307
Length = 307
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 36 IRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAI 95
+R DGR L R +I G GS+ V++G T ++ + +++ P + P G +I
Sbjct: 27 LRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFVTAQLVQPYKDRPSEGSFSI 83
Query: 96 DFHMPPICSPIVRPGRPAEASPVVTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYC 155
P+ P PG P E++ + + + + S +D + L +++GK W +D++
Sbjct: 84 FTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLVWSVRIDLHI 143
Query: 156 XXXXXXXXXXXXXXXXXXXXXXQIPSVAM-NDDGKIVLVSDEDGQKQAQELVNKEKRKLT 214
+ P + D+ + V++ + +E L
Sbjct: 144 LDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPE---------EREPLPLI 194
Query: 215 LRNIPFSLTCILY-KNYILA-DPTAEEESIMETHMTVVLNTSGQLISLYKPG 264
+ ++P + T + K IL DPT EE++M MTV +N +G + ++ KPG
Sbjct: 195 IHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPG 246