Miyakogusa Predicted Gene

Lj0g3v0273429.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0273429.1 tr|Q00RM0|Q00RM0_ORYSA H0814G11.20 protein
OS=Oryza sativa GN=H0814G11.20 PE=4
SV=1,37.5,3e-19,DUF740,Uncharacterised protein family
UPF0503,CUFF.18105.1
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21830.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   124   3e-29
AT1G44608.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...    65   3e-11

>AT1G21830.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF740
           (InterPro:IPR008004); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT1G44608.1); Has 49
           Blast hits to 49 proteins in 12 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:7661429-7662521 REVERSE LENGTH=206
          Length = 206

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/208 (43%), Positives = 119/208 (57%), Gaps = 31/208 (14%)

Query: 9   EEKPCCYFHPKQVVVGVCPLCLNERLLIVAATQGQHSKNRSSKASNKVQSSVHTKPASSI 68
           +  P CYFHPK+  VGVCPLCLNERLL++A+ Q       SS +                
Sbjct: 7   DSSPYCYFHPKEEYVGVCPLCLNERLLVLASKQRSSRTKHSSSSPIISLP---------- 56

Query: 69  HKIFAFGSLFSRQEWKSDNF----DCDVTSPSPEDSFISIKF--------EESTVSNKVS 116
            KIFA  SL SR + +   F    D DV S S EDSFISIKF        E+  V  KV 
Sbjct: 57  -KIFALSSLLSRLDLRHRKFHPSSDLDV-STSQEDSFISIKFENDGNASWEKKAVVTKVC 114

Query: 117 LENCNNKMSWNHHQNNKGTTTTIKSVIEHGKSRDAFRWRKRIGHMFQLIRWKKG----TC 172
           ++N NN  + +  +  +   T+  S++EH  ++ + RWRKRIGH+F +I+ K G    +C
Sbjct: 115 VDNNNNNTTNSTCKKQQSPITSNTSIVEHNSAKSSLRWRKRIGHLFHVIKLKSGSSTSSC 174

Query: 173 HVSSNTSKVEGVKVRK-GWMMRTLTKRK 199
           HV+   SKVEG KVRK GWM+RTLT++K
Sbjct: 175 HVA--PSKVEGTKVRKQGWMVRTLTRKK 200


>AT1G44608.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF740
           (InterPro:IPR008004); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT1G21830.1); Has 49
           Blast hits to 49 proteins in 12 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:16875249-16876258 REVERSE LENGTH=176
          Length = 176

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 26/171 (15%)

Query: 14  CYFHPKQVVVGVCPLCLNERLLIVAATQGQHSKNRSSK----ASNKVQSSVHTKPASSIH 69
           C  HP  V+ GVCPLCLNERLL+VA+ Q        S         +Q+S   KP     
Sbjct: 12  CNIHPVDVIEGVCPLCLNERLLVVASLQRLRPPCPPSSYQTIPKTILQNSSRKKPI---- 67

Query: 70  KIFAFGSLFSRQEWKSDNFDCDVTSPSPEDSFISIKFEESTVSNKVSLENCNNKMSWNHH 129
           ++F+F S F  +  KSD+ +  +   SPEDSFISI FE+            N   SW   
Sbjct: 68  RLFSFFSFFELRHHKSDHQNTSII--SPEDSFISINFED------------NRATSWEKG 113

Query: 130 QNNKGTTTTIKS--VIEHGKSRDAFRWRKRIGHMFQLIRWKKGT--CHVSS 176
           +  +      K   V +         WRKRI  +  +I +K  +  CH+S+
Sbjct: 114 KETQYQHVHTKKEFVPQSTPLPPLLSWRKRIRRLLHVISFKSRSRACHLSA 164