Miyakogusa Predicted Gene

Lj0g3v0273249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0273249.1 Non Chatacterized Hit- tr|I1MMQ7|I1MMQ7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9693
PE=,90.48,1e-16,ACTIN-RELATED PROTEIN,NULL;
ACTIN,Actin-like,gene.Ljchr0_pseudomol_20120828.path1.gene28025.1
         (61 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56180.1 | Symbols: ATARP8, ARP8 | actin-related protein 8 | ...    75   7e-15

>AT5G56180.1 | Symbols: ATARP8, ARP8 | actin-related protein 8 |
           chr5:22737539-22740986 REVERSE LENGTH=471
          Length = 471

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 38/42 (90%)

Query: 1   MSLHQAIALCMDHCYSAELAGNNDWFKTIVLSGGTACLPGLA 42
           MSLHQA++LCMDHC +A L G++ WFKT+VL+GG+ACLPGL+
Sbjct: 367 MSLHQAVSLCMDHCDAAGLTGDDSWFKTVVLTGGSACLPGLS 408