Miyakogusa Predicted Gene

Lj0g3v0272429.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0272429.1 Non Chatacterized Hit- tr|I3T8M4|I3T8M4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.62,0,Ribosomal
protein L5,Ribosomal protein L5 domain; RIBOSOMAL_L5,Ribosomal protein
L5, conserved site;,CUFF.18015.1
         (147 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42740.1 | Symbols: RPL16A | ribosomal protein large subunit ...   251   1e-67
AT5G45775.2 | Symbols:  | Ribosomal L5P family protein | chr5:18...   251   1e-67
AT4G18730.1 | Symbols: RPL16B | ribosomal protein L16B | chr4:10...   251   1e-67
AT3G58700.1 | Symbols:  | Ribosomal L5P family protein | chr3:21...   251   1e-67
AT5G45775.1 | Symbols:  | Ribosomal L5P family protein | chr5:18...   250   2e-67

>AT2G42740.1 | Symbols: RPL16A | ribosomal protein large subunit 16A
           | chr2:17791794-17792946 FORWARD LENGTH=182
          Length = 182

 Score =  251 bits (641), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 126/144 (87%)

Query: 3   QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRK 62
           +VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLR+
Sbjct: 37  KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRR 96

Query: 63  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRV 122
           NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLE                 IQHRV
Sbjct: 97  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRV 156

Query: 123 TKDDAMKWFQVKYEGVILNKAQAV 146
           TKDDAMKWFQVKYEGVILNK+Q +
Sbjct: 157 TKDDAMKWFQVKYEGVILNKSQNI 180


>AT5G45775.2 | Symbols:  | Ribosomal L5P family protein |
           chr5:18565281-18566496 REVERSE LENGTH=182
          Length = 182

 Score =  251 bits (641), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 126/144 (87%)

Query: 3   QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRK 62
           +VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLR+
Sbjct: 37  KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRR 96

Query: 63  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRV 122
           NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLE                 IQHRV
Sbjct: 97  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRV 156

Query: 123 TKDDAMKWFQVKYEGVILNKAQAV 146
           TKDDAMKWFQVKYEGVILNK+Q +
Sbjct: 157 TKDDAMKWFQVKYEGVILNKSQNI 180


>AT4G18730.1 | Symbols: RPL16B | ribosomal protein L16B |
           chr4:10302238-10303206 FORWARD LENGTH=182
          Length = 182

 Score =  251 bits (641), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 126/144 (87%)

Query: 3   QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRK 62
           +VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLR+
Sbjct: 37  KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRR 96

Query: 63  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRV 122
           NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLE                 IQHRV
Sbjct: 97  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRV 156

Query: 123 TKDDAMKWFQVKYEGVILNKAQAV 146
           TKDDAMKWFQVKYEGVILNK+Q +
Sbjct: 157 TKDDAMKWFQVKYEGVILNKSQNI 180


>AT3G58700.1 | Symbols:  | Ribosomal L5P family protein |
           chr3:21711661-21712816 FORWARD LENGTH=182
          Length = 182

 Score =  251 bits (641), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 126/144 (87%)

Query: 3   QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRK 62
           +VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLR+
Sbjct: 37  KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRR 96

Query: 63  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRV 122
           NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLE                 IQHRV
Sbjct: 97  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRV 156

Query: 123 TKDDAMKWFQVKYEGVILNKAQAV 146
           TKDDAMKWFQVKYEGVILNK+Q +
Sbjct: 157 TKDDAMKWFQVKYEGVILNKSQNI 180


>AT5G45775.1 | Symbols:  | Ribosomal L5P family protein |
           chr5:18565281-18566377 REVERSE LENGTH=172
          Length = 172

 Score =  250 bits (638), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 126/144 (87%)

Query: 3   QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRK 62
           +VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLR+
Sbjct: 27  KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRR 86

Query: 63  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRV 122
           NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLE                 IQHRV
Sbjct: 87  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRV 146

Query: 123 TKDDAMKWFQVKYEGVILNKAQAV 146
           TKDDAMKWFQVKYEGVILNK+Q +
Sbjct: 147 TKDDAMKWFQVKYEGVILNKSQNI 170