Miyakogusa Predicted Gene

Lj0g3v0272389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0272389.1 tr|A9BCN6|A9BCN6_PROM4 50S ribosomal protein L24
OS=Prochlorococcus marinus (strain MIT 9211) GN=rpl,47.57,4e-19,KOW
(Kyprides, Ouzounis, Woese) motif.,KOW; rplX_bact: ribosomal protein
L24,Ribosomal protein L24; ,CUFF.18010.1
         (193 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54600.1 | Symbols:  | Translation protein SH3-like family pr...   251   1e-67
AT5G54600.2 | Symbols:  | Translation protein SH3-like family pr...   210   5e-55
AT5G23535.1 | Symbols:  | KOW domain-containing protein | chr5:7...    62   3e-10

>AT5G54600.1 | Symbols:  | Translation protein SH3-like family
           protein | chr5:22183046-22184403 FORWARD LENGTH=198
          Length = 198

 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/173 (70%), Positives = 149/173 (86%), Gaps = 2/173 (1%)

Query: 23  GQRL-SPITLSPRLPGKSADKQCPIVMKLKRWERKKCKPNSLPILHKMHVKLGDTVKIIS 81
           GQRL SPI+LS   P K A+  C ++ KLKRWERK+CKPNSLPILHKMHVK GDTVK+IS
Sbjct: 24  GQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKECKPNSLPILHKMHVKFGDTVKVIS 83

Query: 82  GHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHSSNLMLYSK 141
           G +KGKIGEV ++F HNST+++KD+NLKTKH+KS+EEGEPGQI+K+E PIHSSN+MLYSK
Sbjct: 84  GRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREEGEPGQIVKIEAPIHSSNVMLYSK 143

Query: 142 EKNVASRVGHKVLDNGKSVRYLIKTGEIIDTTENWEKLKEGK-KKTAEVATTA 193
           EK+V SRVGHKVL++G+ VRYLIKTGE+IDT E W+ LKE K K+T +VA T+
Sbjct: 144 EKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLKEAKDKETTQVAVTS 196


>AT5G54600.2 | Symbols:  | Translation protein SH3-like family
           protein | chr5:22183046-22184403 FORWARD LENGTH=179
          Length = 179

 Score =  210 bits (534), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/173 (62%), Positives = 130/173 (75%), Gaps = 21/173 (12%)

Query: 23  GQRL-SPITLSPRLPGKSADKQCPIVMKLKRWERKKCKPNSLPILHKMHVKLGDTVKIIS 81
           GQRL SPI+LS   P K A+  C ++ KLKRWERK+CKPNSLPILHKMHVK GDTVK+IS
Sbjct: 24  GQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKECKPNSLPILHKMHVKFGDTVKVIS 83

Query: 82  GHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHSSNLMLYSK 141
           G +KGKIGEV ++F HNST+                   PGQI+K+E PIHSSN+MLYSK
Sbjct: 84  GRDKGKIGEVTKIFTHNSTI-------------------PGQIVKIEAPIHSSNVMLYSK 124

Query: 142 EKNVASRVGHKVLDNGKSVRYLIKTGEIIDTTENWEKLKEGK-KKTAEVATTA 193
           EK+V SRVGHKVL++G+ VRYLIKTGE+IDT E W+ LKE K K+T +VA T+
Sbjct: 125 EKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLKEAKDKETTQVAVTS 177


>AT5G23535.1 | Symbols:  | KOW domain-containing protein |
           chr5:7935871-7937127 FORWARD LENGTH=159
          Length = 159

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 74  GDTVKIISGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHS 133
           GD V II G +KG+ G + R+ +  + VIV+  NL  KH+K   + E G I  VE P+H+
Sbjct: 18  GDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGGPDHE-GGIFTVEAPLHA 76

Query: 134 SNLMLYSKEKNVASRVGHKVLDNGKSVRYLIKTG 167
           SN+ +         +VG K L++G  VR    TG
Sbjct: 77  SNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTG 110