Miyakogusa Predicted Gene

Lj0g3v0272299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0272299.1 tr|A9S6C0|A9S6C0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_75160
,24.15,0.00000001,seg,NULL,CUFF.18003.1
         (381 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04790.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   186   3e-47
AT4G21880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   184   9e-47

>AT4G04790.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:2435007-2439344 REVERSE
           LENGTH=821
          Length = 821

 Score =  186 bits (471), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 152/258 (58%)

Query: 124 RFQKLIKICALKLGTEAAIELFGKVGRVPGLKGYNALVEICIDKARGADDEDIAIEEMGK 183
           RF K+ +  A KLGTEA    F +V +   +  YNA++ + ++ A  ++D D A+  + K
Sbjct: 121 RFAKIFRDSAQKLGTEAMFGAFDRVAKEMSVTEYNAMIGVYLEHAEKSNDLDYALGHIEK 180

Query: 184 VFQLFKSMTEQGLKLEEQTYRPLLLYVIDMHMVEEFQFFCHVIKEENPSSVTRLGYYELM 243
            F+L KSM ++G  +EE+ Y PLL Y+I M MV+EF  F  VI+E +P SV RLGYYE++
Sbjct: 181 AFELLKSMRDRGFLIEERVYGPLLGYLIGMDMVDEFHSFKDVIREASPGSVERLGYYEML 240

Query: 244 LWLRVNNEEKIQGIYNYIAENDGQDPSNLRESYLLALCESDRXXXXXXXXXXXXXXXXSS 303
           LW+ + + EKI+ + + I  ++G+  S L+E+YLLALC+ D+                 S
Sbjct: 241 LWIHLGDGEKIEELCSTIDGDNGESLSVLQENYLLALCKKDQKYHLERLLEIVDITKVRS 300

Query: 304 AESVAKIFQALGRXXXXXXXXXXXXDFKTSNYEADNITNFIASYAVSIPNLLVEDVITKF 363
           ++ +A IF+ LGR            + + S+    N+++ I+ Y+   PN  VED I KF
Sbjct: 301 SDLLANIFEYLGRFSLDSVASRFLWELRESDEGVKNVSDLISIYSTCTPNPTVEDTILKF 360

Query: 364 KDLHQMLEISPSSSSYEK 381
             +H+ L++ PSS+SYEK
Sbjct: 361 NKMHEELDVMPSSTSYEK 378


>AT4G21880.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:11605156-11610651 FORWARD
           LENGTH=843
          Length = 843

 Score =  184 bits (467), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 100/265 (37%), Positives = 146/265 (55%), Gaps = 2/265 (0%)

Query: 117 FEFAQESRFQKLIKICALKLGTEAAIELFGKVGRVPGLKGYNALVEICIDKARGADDEDI 176
           ++  Q    +KL K C  KLGTE   E+  K+G+  G K YNA+ ++CI +AR ++D + 
Sbjct: 134 YQNKQSEIMEKLAKGCVRKLGTETMFEVLTKMGKEAGEKEYNAMTKLCIQRARRSNDAEY 193

Query: 177 AIEEMGKVFQLFKSMTEQGLKLEEQTYRPLLLYVIDMHMVEEFQFFCHVIKEENPSSVTR 236
           A++++GK  +  K M + G  + E  Y P   Y++DM MV EFQ     IKE  P S  R
Sbjct: 194 ALDQIGKAIEHLKEMRQLGFSIGEGAYGPFFKYLVDMEMVAEFQILKDFIKEACPESCGR 253

Query: 237 LGYYELMLWLRVNNEEKIQGIYNYIAENDGQDPSNLRESYLLALCESDRXXXXXXXXXXX 296
           L YYE++LW++VN+EEKI  + N + ++ G   S L+E YL+ALCE D            
Sbjct: 254 LVYYEMLLWIQVNDEEKIHKLCNKV-DDSGLSLSILQEYYLVALCEKDSKENFQKLLEIV 312

Query: 297 XXXXXSSAESVAKIFQALGRXXXXXXXXXXXXDFKTSNYEA-DNITNFIASYAVSIPNLL 355
                SS +++  IF  LG+            + +    +  + ++N I SYA  IPN  
Sbjct: 313 DITTVSSPDALKSIFGYLGKSLLESVAMKLLWELRDCRKDGVETVSNLIFSYATCIPNST 372

Query: 356 VEDVITKFKDLHQMLEISPSSSSYE 380
           VED I KF  LH+ L+I PSS+SYE
Sbjct: 373 VEDAIFKFNKLHEELDIVPSSTSYE 397