Miyakogusa Predicted Gene

Lj0g3v0272159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0272159.1 tr|I0Z5L3|I0Z5L3_9CHLO NAF1-domain-containing
protein OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,37.25,1e-17,seg,NULL; Translation proteins,Translation
elongation/initiation factor/Ribosomal, beta-barrel;
Gar1,gene.g21137.t1.1
         (193 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03530.1 | Symbols: ATNAF1, NAF1 | nuclear assembly factor 1 ...   173   7e-44
AT4G03380.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    49   3e-06

>AT1G03530.1 | Symbols: ATNAF1, NAF1 | nuclear assembly factor 1 |
           chr1:880638-883338 REVERSE LENGTH=801
          Length = 801

 Score =  173 bits (438), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/155 (55%), Positives = 108/155 (69%), Gaps = 6/155 (3%)

Query: 3   KNDDELEVLPWVPPVNVTLGPHHQMLPVGVVMSILGAQVIVEGVEKHDPLNEGSILWMTE 62
           ++ +EL+ LP VPPV+VTL PHH  LPVGVV+S++ AQVIVEG+EKH PL EGSILW+TE
Sbjct: 357 RSKNELKELPPVPPVDVTLEPHHATLPVGVVLSVMSAQVIVEGMEKHSPLTEGSILWITE 416

Query: 63  SRRPLGFIEEIFGPVEHPYYIVRYNSENEVPEGIRGGTLISFVPEFANHVLRDEELYKKG 122
            R PLG ++EIFGPV+ PYYIVR+NSE+EVPEG+  GT +SFV +FA H+L  +EL KKG
Sbjct: 417 KRTPLGLVDEIFGPVKCPYYIVRFNSESEVPEGVCQGTPVSFVADFAQHILNIKELQKKG 476

Query: 123 YXXXXXXXXXX------XXXXXXXXYKRMQTMAKR 151
           Y                        Y+RMQ + KR
Sbjct: 477 YDASGDNDEEIPDELEFSDDEKEAEYRRMQKLEKR 511


>AT4G03380.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: nuclear assembly factor 1 (TAIR:AT1G03530.1); Has 29
           Blast hits to 29 proteins in 8 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr4:1485049-1490228 REVERSE LENGTH=200
          Length = 200

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 4/79 (5%)

Query: 28  LPVGVVMSILGAQVIVEGVEKHDPLNEGSILWMTESRRPLGFIEE-IFGPVEHPYYIVRY 86
           +P GVV  +    ++V     H PLN G++L +TE++ PLG ++   FG V +P YIV+ 
Sbjct: 9   VPAGVVNMV--QYLVVTNKGDHKPLNVGTMLLITETKVPLGRVDGYFFGSVTNPDYIVKV 66

Query: 87  -NSENEVPEGIRGGTLISF 104
            +SE ++PE  +GG   SF
Sbjct: 67  EDSEMQIPEVRQGGPSGSF 85