Miyakogusa Predicted Gene
- Lj0g3v0271999.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0271999.1 tr|Q6T804|Q6T804_ORYSJ ANTHER INDEHISCENCE1
OS=Oryza sativa subsp. japonica GN=AID1 PE=2
SV=1,32.49,2e-18,Myb_DNA-binding,SANT/Myb domain; HTH_MYB,Myb domain;
Homeodomain-like,Homeodomain-like; SANT SWI3, ,CUFF.17984.1
(668 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58340.2 | Symbols: | myb-like HTH transcriptional regulator... 78 3e-14
AT5G58340.1 | Symbols: | myb-like HTH transcriptional regulator... 78 3e-14
AT1G15720.1 | Symbols: TRFL5 | TRF-like 5 | chr1:5406138-5407310... 73 8e-13
AT3G49850.1 | Symbols: TRB3, ATTRB3, TBP2 | telomere repeat bind... 60 6e-09
AT1G72740.2 | Symbols: | Homeodomain-like/winged-helix DNA-bind... 56 7e-08
AT1G72740.1 | Symbols: | Homeodomain-like/winged-helix DNA-bind... 56 8e-08
AT1G06910.1 | Symbols: TRFL7 | TRF-like 7 | chr1:2121099-2122914... 55 1e-07
AT1G17520.1 | Symbols: | Homeodomain-like/winged-helix DNA-bind... 55 2e-07
AT5G67580.2 | Symbols: TRB2, ATTRB2, TBP3, ATTBP3 | Homeodomain-... 51 3e-06
AT5G67580.1 | Symbols: TRB2, ATTRB2, TBP3, ATTBP3 | Homeodomain-... 51 3e-06
AT1G49950.1 | Symbols: TRB1, ATTRB1 | telomere repeat binding fa... 51 3e-06
AT1G49950.2 | Symbols: TRB1, ATTRB1 | telomere repeat binding fa... 51 3e-06
AT1G49950.3 | Symbols: TRB1, ATTRB1 | telomere repeat binding fa... 51 3e-06
>AT5G58340.2 | Symbols: | myb-like HTH transcriptional regulator
family protein | chr5:23582607-23584245 FORWARD
LENGTH=448
Length = 448
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 98/188 (52%), Gaps = 10/188 (5%)
Query: 81 DSLRRAYCPVAVECTVKCLAASPDDPS-GEYFSAVRRIWRGRVAALSEAGRASGLVSDDL 139
DS + AYC A ECT++ + P S G + A+ RIW R+ L E+G S LV+ DL
Sbjct: 83 DSHKSAYCWTATECTLRFMW--PMFASDGLFTDALERIWTKRIGILKESG--SDLVTCDL 138
Query: 140 ERWRDDVEAALWDPRVSERIAGLNTRWVAMVEVRGYLKEAWEIMGASFLDLMATGSKGKG 199
+W D++ AL DP + +RI N R+ A+ + LKE W ++G+S L+ +A K
Sbjct: 139 LKWESDLKKALGDPELYQRIRETNIRYTAISFLTQLLKEQWALLGSSSLESVAQRRFLKR 198
Query: 200 LCLGGVCENDSVRKRGDGG-LECSAKR--ADSLEGVCENDSVRKCGDGGIECSAKRANRN 256
+ E D V RGD ++ S +R +D+++ E R+ G+G +A
Sbjct: 199 KAVN--VEGDVVDNRGDQSDVDESTRRFGSDTIDIANEARGEREDGNGIGRDNANDGEGM 256
Query: 257 EIDDNDGL 264
E +NDG+
Sbjct: 257 ECLENDGI 264
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 614 RRRKLKWTSLEEETLRAGVKMFGGGNWKAIRDFYSNIFENRSAVDLKDKWRNML 667
RR K W E E LR GVK +G +WK I++ +F R+ VDLKDKWRN++
Sbjct: 394 RRPKKFWKPEEVEALREGVKEYGK-SWKDIKNGNPTVFAERTEVDLKDKWRNLV 446
>AT5G58340.1 | Symbols: | myb-like HTH transcriptional regulator
family protein | chr5:23582607-23584245 FORWARD
LENGTH=448
Length = 448
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 98/188 (52%), Gaps = 10/188 (5%)
Query: 81 DSLRRAYCPVAVECTVKCLAASPDDPS-GEYFSAVRRIWRGRVAALSEAGRASGLVSDDL 139
DS + AYC A ECT++ + P S G + A+ RIW R+ L E+G S LV+ DL
Sbjct: 83 DSHKSAYCWTATECTLRFMW--PMFASDGLFTDALERIWTKRIGILKESG--SDLVTCDL 138
Query: 140 ERWRDDVEAALWDPRVSERIAGLNTRWVAMVEVRGYLKEAWEIMGASFLDLMATGSKGKG 199
+W D++ AL DP + +RI N R+ A+ + LKE W ++G+S L+ +A K
Sbjct: 139 LKWESDLKKALGDPELYQRIRETNIRYTAISFLTQLLKEQWALLGSSSLESVAQRRFLKR 198
Query: 200 LCLGGVCENDSVRKRGDGG-LECSAKR--ADSLEGVCENDSVRKCGDGGIECSAKRANRN 256
+ E D V RGD ++ S +R +D+++ E R+ G+G +A
Sbjct: 199 KAVN--VEGDVVDNRGDQSDVDESTRRFGSDTIDIANEARGEREDGNGIGRDNANDGEGM 256
Query: 257 EIDDNDGL 264
E +NDG+
Sbjct: 257 ECLENDGI 264
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 614 RRRKLKWTSLEEETLRAGVKMFGGGNWKAIRDFYSNIFENRSAVDLKDKWRNML 667
RR K W E E LR GVK +G +WK I++ +F R+ VDLKDKWRN++
Sbjct: 394 RRPKKFWKPEEVEALREGVKEYGK-SWKDIKNGNPTVFAERTEVDLKDKWRNLV 446
>AT1G15720.1 | Symbols: TRFL5 | TRF-like 5 | chr1:5406138-5407310
FORWARD LENGTH=390
Length = 390
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 82 SLRRAYCPVAVECTVKCLAASPDDPSGEYF-SAVRRIWRGRVAALSEAGRASGLVSDDLE 140
SL+ AYC AVECT++ + P + S +F A+ RIWR R+ L E + S LV+ +L
Sbjct: 84 SLKSAYCWTAVECTLRFMW--PVNASDGFFGDALERIWRNRIGTLKE--KESDLVTRELL 139
Query: 141 RWRDDVEAALWDPRVSERIAGLNTRWVAMVEVRGYLKEAWEIMGASFLD 189
+W D+ A +P + ++I N R+ A+ + LKE W ++G S L+
Sbjct: 140 KWESDLNKAFEEPEIYQKIRETNIRYNAISHLNQLLKEQWALLGCSSLE 188
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 620 WTSLEEETLRAGVKMFGGGNWKAIRDFYSNIFENRSAVDLKDKWRNML 667
WTS E LR GVK +G +WK I++ Y +F +RS VDLKDKWRN+L
Sbjct: 341 WTSEEVAALREGVKEYGK-SWKDIKNSYPVVFADRSEVDLKDKWRNLL 387
>AT3G49850.1 | Symbols: TRB3, ATTRB3, TBP2 | telomere repeat binding
factor 3 | chr3:18489451-18490731 FORWARD LENGTH=295
Length = 295
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 617 KLKWTSLEEETLRAGVKMFGGGNWKAIRD--FYSNIFENRSAVDLKDKWRNM 666
KLKWT EE L+AGV G G W+ I YS I ++RS VDLKDKWRN+
Sbjct: 5 KLKWTPEEETALKAGVLKHGTGKWRTILSDPVYSTILKSRSNVDLKDKWRNI 56
>AT1G72740.2 | Symbols: | Homeodomain-like/winged-helix DNA-binding
family protein | chr1:27380499-27382687 REVERSE
LENGTH=281
Length = 281
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 616 RKLKWTSLEEETLRAGVKMFGGGNWKAI-RDF-YSNIFENRSAVDLKDKWRNM 666
+KLKWT+ EEE L AG++ G G WK I RD +++ +RS +DLKDKWRN+
Sbjct: 4 QKLKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNL 56
>AT1G72740.1 | Symbols: | Homeodomain-like/winged-helix DNA-binding
family protein | chr1:27380499-27382687 REVERSE
LENGTH=287
Length = 287
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 616 RKLKWTSLEEETLRAGVKMFGGGNWKAI-RDF-YSNIFENRSAVDLKDKWRNM 666
+KLKWT+ EEE L AG++ G G WK I RD +++ +RS +DLKDKWRN+
Sbjct: 4 QKLKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNL 56
>AT1G06910.1 | Symbols: TRFL7 | TRF-like 7 | chr1:2121099-2122914
FORWARD LENGTH=390
Length = 390
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 79 VPDSLRRAYCPVAVECTVKCLAASPDDPSGEYFSAVRRIWRGRVAALSEAGRASGLVSDD 138
VP S+ AYC VAVECTVKCLA D Y A++ IW GR+ L + + S LV+ D
Sbjct: 45 VPKSVTEAYCKVAVECTVKCLAYEKDAKKA-YTEAIKTIWLGRIMPLCD--KVSCLVTLD 101
Query: 139 L 139
L
Sbjct: 102 L 102
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 29/106 (27%)
Query: 585 RPNLMERRSNAQTYEWNDSIDNLP-----------------QVIQP----------RRRK 617
RP+LME RS A TYEWNDSID+ V+ P RR K
Sbjct: 276 RPSLMEPRSTAHTYEWNDSIDDSDGEMGDDIERINKSKRKRIVVSPLKRNRCSEGARRPK 335
Query: 618 LKWTSLEEETLRAGVKMFGGGNWKAIRDFYSNIFENRSAVDLKDKW 663
L W++ E + G + + G NWK I+D + + R+ D+KDK+
Sbjct: 336 LPWSTAETLAVLKGYEKY-GANWKRIKD-ENPVLVRRTNGDIKDKF 379
>AT1G17520.1 | Symbols: | Homeodomain-like/winged-helix DNA-binding
family protein | chr1:6024959-6027224 REVERSE LENGTH=296
Length = 296
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 616 RKLKWTSLEEETLRAGVKMFGGGNWKAI-RDF-YSNIFENRSAVDLKDKWRNM 666
+KLKWT+ EEE L AGV+ G G WK I RD + +RS +DLKDKWRN+
Sbjct: 4 QKLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNL 56
>AT5G67580.2 | Symbols: TRB2, ATTRB2, TBP3, ATTBP3 |
Homeodomain-like/winged-helix DNA-binding family protein
| chr5:26955843-26957073 REVERSE LENGTH=299
Length = 299
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 617 KLKWTSLEEETLRAGVKMFGGGNWKAIRD--FYSNIFENRSAVDLKDKWRNM 666
K KWT EE L+AGV G G W+ I +S I ++RS VDLKDKWRN+
Sbjct: 5 KQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNI 56
>AT5G67580.1 | Symbols: TRB2, ATTRB2, TBP3, ATTBP3 |
Homeodomain-like/winged-helix DNA-binding family protein
| chr5:26955843-26957073 REVERSE LENGTH=299
Length = 299
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 617 KLKWTSLEEETLRAGVKMFGGGNWKAIRD--FYSNIFENRSAVDLKDKWRNM 666
K KWT EE L+AGV G G W+ I +S I ++RS VDLKDKWRN+
Sbjct: 5 KQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNI 56
>AT1G49950.1 | Symbols: TRB1, ATTRB1 | telomere repeat binding
factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300
Length = 300
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 617 KLKWTSLEEETLRAGVKMFGGGNWKAIRD--FYSNIFENRSAVDLKDKWRNM 666
K KWT EE L++GV G G W+ I +S + RS VDLKDKWRNM
Sbjct: 5 KQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
>AT1G49950.2 | Symbols: TRB1, ATTRB1 | telomere repeat binding
factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300
Length = 300
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 617 KLKWTSLEEETLRAGVKMFGGGNWKAIRD--FYSNIFENRSAVDLKDKWRNM 666
K KWT EE L++GV G G W+ I +S + RS VDLKDKWRNM
Sbjct: 5 KQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
>AT1G49950.3 | Symbols: TRB1, ATTRB1 | telomere repeat binding
factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300
Length = 300
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 617 KLKWTSLEEETLRAGVKMFGGGNWKAIRD--FYSNIFENRSAVDLKDKWRNM 666
K KWT EE L++GV G G W+ I +S + RS VDLKDKWRNM
Sbjct: 5 KQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56