Miyakogusa Predicted Gene

Lj0g3v0271889.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271889.1 tr|A9SGP8|A9SGP8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_164794,37.65,0.000000000000003,seg,NULL,CUFF.17978.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46550.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    51   3e-07
AT2G46550.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    50   4e-07

>AT2G46550.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 13 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT1G01240.3). | chr2:19112264-19113037 REVERSE
           LENGTH=257
          Length = 257

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 2   AELLEALCHSQTXXXXXXXXXXXXYNEKEHILSLFFRQASQLFAYKQWFH 51
           +ELLEAL  SQT            Y EKEH++ +  +QA++LF YKQW  
Sbjct: 124 SELLEALRRSQTRAREAENMAKEAYAEKEHLVKILLKQAAELFGYKQWLQ 173


>AT2G46550.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in
           13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi
           - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr2:19112264-19113457 REVERSE
           LENGTH=397
          Length = 397

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 2   AELLEALCHSQTXXXXXXXXXXXXYNEKEHILSLFFRQASQLFAYKQWFH 51
           +ELLEAL  SQT            Y EKEH++ +  +QA++LF YKQW  
Sbjct: 264 SELLEALRRSQTRAREAENMAKEAYAEKEHLVKILLKQAAELFGYKQWLQ 313