Miyakogusa Predicted Gene

Lj0g3v0271879.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271879.1 Non Chatacterized Hit- tr|G7I3G5|G7I3G5_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,78.95,6e-19,Pcc1,EKC/KEOPS complex, subunit
Pcc1,CUFF.17975.1
         (93 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53045.1 | Symbols:  | unknown protein; Has 122 Blast hits to...   116   2e-27

>AT5G53045.1 | Symbols:  | unknown protein; Has 122 Blast hits to
          122 proteins in 57 species: Archae - 0; Bacteria - 0;
          Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0;
          Other Eukaryotes - 5 (source: NCBI BLink). |
          chr5:21508603-21509538 REVERSE LENGTH=96
          Length = 96

 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 71/95 (74%), Gaps = 6/95 (6%)

Query: 1  MAALVKADAQS------QSDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKL 54
          MAA V A  +S        +L+V F  EE+A I Y +LAVDKEL PDKV ++M VSN KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 55 SVHFEAVEARFLRASFSAFLDVLTLATNTIEEFGQ 89
          SVHFEA+EAR LRASFSAF+DVLTLAT TI+EFGQ
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQ 95