Miyakogusa Predicted Gene

Lj0g3v0271779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271779.1 tr|C7QXI5|C7QXI5_CYAP0 Rieske (2Fe-2S) domain
protein OS=Cyanothece sp. (strain PCC 8802) GN=Cyan880,47.73,5e-19,ISP
domain,Rieske [2Fe-2S] iron-sulphur domain; RIESKE,Rieske [2Fe-2S]
iron-sulphur domain; no descr,CUFF.17965.1
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G24820.1 | Symbols: TIC55-II | translocon at the inner envelo...   215   2e-56
AT3G44880.1 | Symbols: ACD1, LLS1, PAO | Pheophorbide a oxygenas...    97   5e-21
AT4G25650.2 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like | ...    88   4e-18
AT4G25650.1 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like | ...    88   4e-18
AT1G44446.2 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenas...    71   4e-13
AT1G44446.3 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenas...    71   5e-13
AT1G44446.1 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenas...    71   5e-13

>AT2G24820.1 | Symbols: TIC55-II | translocon at the inner envelope
           membrane of chloroplasts 55-II | chr2:10575038-10576829
           FORWARD LENGTH=539
          Length = 539

 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/162 (67%), Positives = 121/162 (74%), Gaps = 11/162 (6%)

Query: 31  SLTSNPFKPVLPSSRRKNTKWGATADIKTAPLLDGEEDHKVLVGPSSEEERRGDRVVADY 90
           S  + P KP L   RR      A +D         E    VL+ P  EEE+R +  VADY
Sbjct: 34  STCTIPTKPRLRLLRRSAVAGTAVSD-------QTEGGGDVLLNP--EEEKRVE--VADY 82

Query: 91  DWTEEWYPLYLTKNVPEDAPLGLKVFDKDLVLFRDGNGEFRCYEDRCPHRLAKLSEGQLI 150
           DWTEEWYPLYLTKNVPEDAPLGL V+D+ +VL++DG G  RCYEDRCPHRLAKLSEGQLI
Sbjct: 83  DWTEEWYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLI 142

Query: 151 DGRIECLYHGWQFEGEGKCVKIPQLPADAKIPKSACVKTYEA 192
           DGR+ECLYHGWQFEGEGKCVKIPQLPA AKIPK+ACVKTYE 
Sbjct: 143 DGRLECLYHGWQFEGEGKCVKIPQLPASAKIPKAACVKTYEV 184


>AT3G44880.1 | Symbols: ACD1, LLS1, PAO | Pheophorbide a oxygenase
           family protein with Rieske [2Fe-2S] domain |
           chr3:16383858-16386204 FORWARD LENGTH=537
          Length = 537

 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 98/190 (51%), Gaps = 32/190 (16%)

Query: 7   FIFPTQTCFPLHVSASQSKQVLLWSLTSNPFKPVLPSSRRKNTKWGATADIKTAPLLDGE 66
           F+ PT T FPL VS S S+  L      NP +   P S                P  D  
Sbjct: 23  FLSPT-TKFPLKVSISPSRSKLF----HNPLRVAAPPS---------------VPTSDST 62

Query: 67  EDHKVLVGPSSEEERRGDRVV--ADYDWTEEWYPLYLTKNVPEDAPLGLKVFDKDLVLFR 124
           E+ ++      EEE  GD+    +++ W + WYP+ L +++  + P   ++  +DLVL+ 
Sbjct: 63  EEKRI------EEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWF 116

Query: 125 DGNGE-FRCYEDRCPHRLAKLSEGQLI-DGRIECLYHGWQFEGEGKCVKIPQLPADAKIP 182
           D N + +  ++D CPHRLA LSEG+L  +G ++C YHGW F G G C +IPQ  A    P
Sbjct: 117 DRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQ--AATSGP 174

Query: 183 KSACVKTYEA 192
           ++  VK+  A
Sbjct: 175 EARAVKSPRA 184


>AT4G25650.2 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like |
           chr4:13081021-13083153 REVERSE LENGTH=559
          Length = 559

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 90  YDWTEEWYPLYLTKNVPEDAPLGLKVFDKDLVLFRDGN-GEFRCYEDRCPHRLAKLSEGQ 148
           +DW   WYP+    ++ +  P G KV   DLV++ D N  +++  +D CPHRLA LS+G+
Sbjct: 79  FDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDGR 138

Query: 149 LID-GRIECLYHGWQFEGEGKCVKIPQLPADA---KIPKSACVKTYEA 192
           +   GR++C+YHGW F G G C  IPQ P D       K ACV  Y +
Sbjct: 139 IDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPS 186


>AT4G25650.1 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like |
           chr4:13081021-13083153 REVERSE LENGTH=536
          Length = 536

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 90  YDWTEEWYPLYLTKNVPEDAPLGLKVFDKDLVLFRDGN-GEFRCYEDRCPHRLAKLSEGQ 148
           +DW   WYP+    ++ +  P G KV   DLV++ D N  +++  +D CPHRLA LS+G+
Sbjct: 79  FDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDGR 138

Query: 149 LID-GRIECLYHGWQFEGEGKCVKIPQLPADA---KIPKSACVKTYEA 192
           +   GR++C+YHGW F G G C  IPQ P D       K ACV  Y +
Sbjct: 139 IDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPS 186


>AT1G44446.2 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase
           family protein with Rieske [2Fe-2S] domain |
           chr1:16848822-16851152 REVERSE LENGTH=511
          Length = 511

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%)

Query: 96  WYPLYLTKNVPEDAPLGLKVFDKDLVLFRDGNGEFRCYEDRCPHRLAKLSEGQLIDGRIE 155
           WYP+  T ++  D  + ++ F++  V+FR  +G+  C  + C HR   L  G + +GRI+
Sbjct: 221 WYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQ 280

Query: 156 CLYHGWQFEGEGKCVKIP 173
           C YHGW++  +G+C K+P
Sbjct: 281 CPYHGWEYSTDGECKKMP 298


>AT1G44446.3 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase
           family protein with Rieske [2Fe-2S] domain |
           chr1:16849132-16851152 REVERSE LENGTH=433
          Length = 433

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 48/79 (60%)

Query: 96  WYPLYLTKNVPEDAPLGLKVFDKDLVLFRDGNGEFRCYEDRCPHRLAKLSEGQLIDGRIE 155
           WYP+  T ++  D  + ++ F++  V+FR  +G+  C  + C HR   L  G + +GRI+
Sbjct: 221 WYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQ 280

Query: 156 CLYHGWQFEGEGKCVKIPQ 174
           C YHGW++  +G+C K+P 
Sbjct: 281 CPYHGWEYSTDGECKKMPS 299


>AT1G44446.1 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase
           family protein with Rieske [2Fe-2S] domain |
           chr1:16848664-16851152 REVERSE LENGTH=536
          Length = 536

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%)

Query: 96  WYPLYLTKNVPEDAPLGLKVFDKDLVLFRDGNGEFRCYEDRCPHRLAKLSEGQLIDGRIE 155
           WYP+  T ++  D  + ++ F++  V+FR  +G+  C  + C HR   L  G + +GRI+
Sbjct: 221 WYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQ 280

Query: 156 CLYHGWQFEGEGKCVKIP 173
           C YHGW++  +G+C K+P
Sbjct: 281 CPYHGWEYSTDGECKKMP 298